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| <div class="organismName">Search • Rhodosporidium toruloides IFO0880 v4.0</div> |
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| <div class="together"><label for="search_for_genes:usecase" class="label">Search By:</label><br /><select id="search_for_genes:usecase" name="search_for_genes:usecase" class="query" size="1" onchange="A4J.AJAX.Submit('search_for_genes',event,{'similarityGroupingId':'search_for_genes:j_id26','parameters':{'search_for_genes:j_id26':'search_for_genes:j_id26'} } )"> <option value="SearchForGeneByKeywords" selected="selected">Keywords</option> |
| <option value="SearchForGeneByName">Model Name</option> |
| <option value="SearchForGeneByProteinId">Protein Id</option> |
| <option value="SearchForGeneByTranscriptId">Transcript Id</option> |
| <option value="SearchForGeneByTrack">Track</option> |
| <option value="SearchForGeneByGoTerm">Go Terms</option> |
| <option value="SearchForGeneByGoTermDescription">Go Terms and Descriptions</option> |
| <option value="SearchForGeneByGoLineage">Go Lineage</option> |
| <option value="SearchForGeneByGoLineageDescription">Go Lineage and Descriptions</option> |
| <option value="SearchForGeneByPfamTerm">PFAM Terms</option> |
| <option value="SearchForGeneByPfamTermDescription">PFAM Terms and Descriptions</option> |
| <option value="SearchForGeneByKogTerm">KOG Terms</option> |
| <option value="SearchForGeneByKogTermDescription">KOG Terms and Description</option> |
| <option value="SearchForGeneByKogFunctionTermDescription">KOG Function and Description</option> |
| <option value="SearchForGeneByEcTerm">KEGG Terms</option> |
| <option value="SearchForGeneByEcTermDescription">KEGG Terms and Descriptions</option> |
| <option value="SearchForGeneByEcPathwayDescription">KEGG Pathway and Descriptions</option> |
| <option value="SearchForGeneByCazyTerm">CAZY Terms</option> |
| <option value="SearchForGeneByCazyTermDescription">CAZY Terms and Description</option> |
| <option value="SearchForGeneByUserAnnotations">User annotations</option> |
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| <div class="together"><label for="search_for_genes:tracks" class="label">Across:</label><br /><select id="search_for_genes:tracks" name="search_for_genes:tracks" class="query" size="1"> <option value="default_track" selected="selected">Default</option> |
| <option value="gene_catalog">Catalog</option> |
| <option value="all_models">All</option> |
| </select> |
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| <div class="together"><label for="search_for_genes:termsOption" class="label">Terms:</label><br /><select id="search_for_genes:termsOption" name="search_for_genes:termsOption" class="query" size="1"> <option value="exact">exact - fast</option> |
| <option value="prefix" selected="selected">prefix - slow</option> |
| <option value="wildcard">wildcards - very slow</option> |
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| <div class="together"><label for="search_for_genes:downloadOption" style="display: none" class="label">File type</label><select id="search_for_genes:downloadOption" name="search_for_genes:downloadOption" class="query" size="1"> <option value="asCSV" selected="selected">as CSV</option> |
| <option value="asProteinFasta">as protein FASTA</option> |
| <option value="asTranscriptFasta">as transcript FASTA</option> |
| <option value="asGenomicFasta">as genomic FASTA</option> |
| </select> |
| </div> |
| <div class="together"><label for="search_for_genes:compressOption" style="display: none" class="label">Compressed by</label><select id="search_for_genes:compressOption" name="search_for_genes:compressOption" class="query" size="1"> <option value="uncompressed">uncompressed</option> |
| <option value="gzip" selected="selected">compressed by Gzip</option> |
| <option value="zip">compressed by Zip</option> |
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| </div><div id="search_for_genes:j_id45"> |
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| <div id="tabl_totals"> |
| <div class="l">Total genes found:</div> |
| <div class="v">440</div> |
| </div> |
| |
| <div id="tabl_nav"><div class="rich-datascr scroller" id="search_for_genes:results_scroller" style=" " align="center"><table border="0" cellpadding="0" cellspacing="1" class="rich-dtascroller-table " id="search_for_genes:results_scroller_table" style="text-align:center"><tbody><tr><td class="rich-datascr-button-dsbld rich-datascr-button"><a class="rich-datascr-button-content" href="javascript:void(0)">««</a></td><td class="rich-datascr-button-dsbld rich-datascr-button"><a class="rich-datascr-button-content" href="javascript:void(0)">«</a></td><td class="rich-datascr-button-dsbld rich-datascr-button"></td><td class="rich-datascr-button-dsbld rich-datascr-button"></td><td class="rich-datascr-button-dsbld rich-datascr-button"><a class="rich-datascr-button-content" href="javascript:void(0)">»</a></td><td class="rich-datascr-button-dsbld rich-datascr-button"><a class="rich-datascr-button-content" href="javascript:void(0)">»»</a></td></tr></tbody></table><script type="text/javascript">new Richfaces.Datascroller('search_for_genes:results_scroller', function(event){A4J.AJAX.Submit('search_for_genes',event,{'similarityGroupingId':'search_for_genes:results_scroller','implicitEventsQueue':'search_for_genes:results_scroller','parameters':{'search_for_genes:results_scroller':event.memo.page,'ajaxSingle':'search_for_genes:results_scroller'} ,'ignoreDupResponses':true} ); return false;});</script></div><select id="search_for_genes:rowsPerPage" name="search_for_genes:rowsPerPage" class="rows-select" size="1" onchange="A4J.AJAX.Submit('search_for_genes',event,{'similarityGroupingId':'search_for_genes:j_id47','control':this,'parameters':{'search_for_genes:j_id47':'search_for_genes:j_id47','ajaxSingle':'search_for_genes:rowsPerPage'} } )"> <option value="r25">25</option> |
| <option value="r50">50</option> |
| <option value="r100">100</option> |
| <option value="r1000">1000</option> |
| <option value="all" selected="selected">all</option> |
| </select><label for="search_for_genes:rowsPerPage" class="rows-label">rows per page</label> |
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| |
| <div class="clear"></div><table class="rich-table results-table" id="search_for_genes:results_table" border="0" cellpadding="0" cellspacing="0"><colgroup span="4"></colgroup><thead class="rich-table-thead"><tr class="rich-table-subheader "><th class="rich-table-subheadercell " scope="col" id="search_for_genes:results_table:j_id51header"><div id="search_for_genes:results_table:j_id51header:sortDiv">Gene</div></th><th class="rich-table-subheadercell " scope="col" id="search_for_genes:results_table:j_id54header"><div id="search_for_genes:results_table:j_id54header:sortDiv">Gene Ontology</div></th><th class="rich-table-subheadercell " scope="col" id="search_for_genes:results_table:j_id58header"><div id="search_for_genes:results_table:j_id58header:sortDiv">Annotations</div></th><th class="rich-table-subheadercell " scope="col" id="search_for_genes:results_table:j_id62header"><div id="search_for_genes:results_table:j_id62header:sortDiv">User Annotations</div></th></tr></thead><tbody id="search_for_genes:results_table:tb"><tr class="rich-table-row rich-table-firstrow "><td class="rich-table-cell gene" id="search_for_genes:results_table:0:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8380">8380</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8380&pViewType=protein">8508</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:32509-33351">scaffold_1:32509-33351 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gw1.1.13.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:0:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005509" class="t">GO:0005509</a> |
| <span class="n">calcium ion binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:0:j_id58"><div class="term"><span class="t">KOG0031</span><span class="n">Myosin regulatory light chain, EF-Hand protein superfamily</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13405" class="t">PF13405</a><span class="n">EF-hand domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018247" class="t">IPR018247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002048" class="t">IPR002048</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:0:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:1:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8391">8391</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8391&pViewType=protein">8519</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:64054-62242">scaffold_1:62242-64054 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_83_#_TRINITY_DN1945_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:1:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:1:j_id58"><div class="term"><span class="t">KOG2309</span><span class="n">60s ribosomal protein L2/L8</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03947" class="t">PF03947</a><span class="n">Ribosomal Proteins L2, C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00181" class="t">PF00181</a><span class="n">Ribosomal Proteins L2, RNA binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022666" class="t">IPR022666</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022669" class="t">IPR022669</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002171" class="t">IPR002171</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022671" class="t">IPR022671</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:1:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:2:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8485">8485</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8485&pViewType=protein">8613</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:276644-278294">scaffold_1:276644-278294 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_389_#_TRINITY_DN2552_c1_g1_i6_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:2:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:2:j_id58"><div class="term"><span class="t">KOG0816</span><span class="n">Protein involved in mRNA turnover</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00466" class="t">PF00466</a><span class="n">Ribosomal protein L10</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001790" class="t">IPR001790</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:2:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:3:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8495">8495</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8495&pViewType=protein">8623</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:304028-307456">scaffold_1:304028-307456 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE10951_24940_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:3:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:3:j_id58"><div class="term"><span class="t">KOG0198</span><span class="n">MEKK and related serine/threonine protein kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:3:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:4:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8507">8507</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8507&pViewType=protein">8635</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:336581-333813">scaffold_1:333813-336581 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_469_#_TRINITY_DN535_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:4:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:4:j_id58"><div class="term"><span class="t">KOG2484</span><span class="n">GTPase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08701" class="t">PF08701</a><span class="n">GNL3L/Grn1 putative GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR030378" class="t">IPR030378</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014813" class="t">IPR014813</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:4:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:5:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8539">8539</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8539&pViewType=protein">8667</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:419154-420743">scaffold_1:419154-420743 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_577_#_TRINITY_DN2241_c0_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:5:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005850" class="t">GO:0005850</a> |
| <span class="n">eukaryotic translation initiation factor 2 complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:5:j_id58"><div class="term"><span class="t">KOG2916</span><span class="n">Translation initiation factor 2, alpha subunit (eIF-2alpha)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00575" class="t">PF00575</a><span class="n">S1 RNA binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07541" class="t">PF07541</a><span class="n">Eukaryotic translation initiation factor 2 alpha subunit</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022967" class="t">IPR022967</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024054" class="t">IPR024054</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003029" class="t">IPR003029</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011488" class="t">IPR011488</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024055" class="t">IPR024055</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:5:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:6:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8546">8546</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8546&pViewType=protein">8674</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:435064-437811">scaffold_1:435064-437811 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_603_#_TRINITY_DN3225_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:6:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006396" class="t">GO:0006396</a> |
| <span class="n">RNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016779" class="t">GO:0016779</a> |
| <span class="n">nucleotidyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:6:j_id58"><div class="term"><span class="t">KOG2159</span><span class="n">tRNA nucleotidyltransferase/poly(A) polymerase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12627" class="t">PF12627</a><span class="n">Probable RNA and SrmB- binding site of polymerase A</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01743" class="t">PF01743</a><span class="n">Poly A polymerase head domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002646" class="t">IPR002646</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:6:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:7:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8550">8550</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8550&pViewType=protein">8678</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:444940-442936">scaffold_1:442936-444940 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_619_#_TRINITY_DN2710_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:7:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:7:j_id58"><div class="term"><span class="t">KOG2485</span><span class="n">Conserved ATP/GTP binding protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:7:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:8:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8556">8556</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8556&pViewType=protein">8684</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:460202-455581">scaffold_1:455581-460202 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_633_#_TRINITY_DN1374_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:8:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:8:j_id58"><div class="term"><span class="t">KOG0467</span><span class="n">Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.5.-" class="t">EC:3.6.5.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14492" class="t">PF14492</a><span class="n">Elongation Factor G, domain III</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00679" class="t">PF00679</a><span class="n">Elongation factor G C-terminus</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000640" class="t">IPR000640</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009022" class="t">IPR009022</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:8:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:9:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8566">8566</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8566&pViewType=protein">8694</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:484899-486141">scaffold_1:484899-486141 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_653_#_TRINITY_DN1751_c0_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:9:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:9:j_id58"><div class="term"><span class="t">KOG3311</span><span class="n">Ribosomal protein S18</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00416" class="t">PF00416</a><span class="n">Ribosomal protein S13/S18</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010979" class="t">IPR010979</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001892" class="t">IPR001892</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:9:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:10:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8574">8574</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8574&pViewType=protein">8702</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:504560-503090">scaffold_1:503090-504560 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.1.247.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:10:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:10:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000961" class="t">IPR000961</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:10:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:11:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8575">8575</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8575&pViewType=protein">8703</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:508770-506295">scaffold_1:506295-508770 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_692_#_TRINITY_DN360_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:11:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:11:j_id58"><div class="term"><span class="t">KOG1936</span><span class="n">Histidyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.21" class="t">EC:6.1.1.21</a><span class="n">histidine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00458" class="t">PF00458</a><span class="n">WHEP-TRS domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13393" class="t">PF13393</a><span class="n">Histidyl-tRNA synthetase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03129" class="t">PF03129</a><span class="n">Anticodon binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000738" class="t">IPR000738</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004154" class="t">IPR004154</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009068" class="t">IPR009068</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:11:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:12:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8595">8595</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8595&pViewType=protein">8723</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:562506-561039">scaffold_1:561039-562506 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.1.216.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:12:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:12:j_id58"><div class="term"><span class="t">KOG1669</span><span class="n">Predicted mRNA cap-binding protein related to eIF-4E</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01652" class="t">PF01652</a><span class="n">Eukaryotic initiation factor 4E</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019770" class="t">IPR019770</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001040" class="t">IPR001040</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023398" class="t">IPR023398</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:12:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:13:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8647">8647</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8647&pViewType=protein">8775</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:665902-666990">scaffold_1:665902-666990 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.1_#_137_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:13:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:13:j_id58"><div class="term"><span class="t">KOG2988</span><span class="n">60S ribosomal protein L30</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01248" class="t">PF01248</a><span class="n">Ribosomal protein L7Ae/L30e/S12e/Gadd45 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004038" class="t">IPR004038</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029064" class="t">IPR029064</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022991" class="t">IPR022991</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:13:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:14:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8695">8695</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8695&pViewType=protein">8823</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:779249-778008">scaffold_1:778008-779249 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.306_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:14:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:14:j_id58"><div class="term"><span class="t">KOG0378</span><span class="n">40S ribosomal protein S4</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:14:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:15:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8696">8696</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8696&pViewType=protein">8824</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:780956-779433">scaffold_1:779433-780956 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1126_#_TRINITY_DN3090_c2_g1_i6_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:15:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:15:j_id58"><div class="term"><span class="t">KOG0378</span><span class="n">40S ribosomal protein S4</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00900" class="t">PF00900</a><span class="n">Ribosomal family S4e</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00467" class="t">PF00467</a><span class="n">KOW motif</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01479" class="t">PF01479</a><span class="n">S4 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08071" class="t">PF08071</a><span class="n">RS4NT (NUC023) domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005824" class="t">IPR005824</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013845" class="t">IPR013845</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002942" class="t">IPR002942</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013843" class="t">IPR013843</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000876" class="t">IPR000876</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:15:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:16:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8748">8748</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8748&pViewType=protein">8876</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:886656-884954">scaffold_1:884954-886656 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1274_#_TRINITY_DN2215_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:16:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000213" class="t">GO:0000213</a> |
| <span class="n">tRNA-intron endonuclease activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000214" class="t">GO:0000214</a> |
| <span class="n">tRNA-intron endonuclease complex</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006388" class="t">GO:0006388</a> |
| <span class="n">tRNA splicing, via endonucleolytic cleavage and ligation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:16:j_id58"><div class="term"><span class="t">KOG4685</span><span class="n">tRNA splicing endonuclease SEN2</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.27.9" class="t">EC:3.1.27.9</a><span class="n">Transferred to 4.6.1.16</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01974" class="t">PF01974</a><span class="n">tRNA intron endonuclease, catalytic C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006677" class="t">IPR006677</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016589" class="t">IPR016589</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:16:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:17:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8751">8751</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8751&pViewType=protein">8879</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:892151-890555">scaffold_1:890555-892151 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1284_#_TRINITY_DN3378_c4_g6_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:17:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:17:j_id58"><div class="term"><span class="t">KOG3475</span><span class="n">60S ribosomal protein L37</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01907" class="t">PF01907</a><span class="n">Ribosomal protein L37e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001569" class="t">IPR001569</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011332" class="t">IPR011332</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018267" class="t">IPR018267</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:17:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:18:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8752">8752</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8752&pViewType=protein">8880</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:892129-892829">scaffold_1:892129-892829 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1287_#_TRINITY_DN3378_c4_g4_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:18:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:18:j_id58"><div class="term"><span class="t">KOG0004</span><span class="n">Ubiquitin/40S ribosomal protein S27a fusion</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01599" class="t">PF01599</a><span class="n">Ribosomal protein S27a</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011332" class="t">IPR011332</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002906" class="t">IPR002906</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:18:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:19:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8801">8801</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8801&pViewType=protein">8929</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1004281-1006320">scaffold_1:1004281-1006320 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1407_#_TRINITY_DN776_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:19:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:19:j_id58"><div class="term"><span class="t">KOG1560</span><span class="n">Translation initiation factor 3, subunit h (eIF-3h)</span></div><div class="term"><a href="https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=M67.UNW" class="t">M67.UNW</a><span class="n">M67.UNW</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:19:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:20:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8844">8844</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8844&pViewType=protein">8972</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1105991-1107465">scaffold_1:1105991-1107465 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE37294_549134_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:20:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:20:j_id58"><div class="term"><span class="t">KOG3406</span><span class="n">40S ribosomal protein S12</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01248" class="t">PF01248</a><span class="n">Ribosomal protein L7Ae/L30e/S12e/Gadd45 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004038" class="t">IPR004038</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000530" class="t">IPR000530</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029064" class="t">IPR029064</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:20:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:21:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8857">8857</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8857&pViewType=protein">8985</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1163888-1162122">scaffold_1:1162122-1163888 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_1_t20217_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:21:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:21:j_id58"><div class="term"><span class="t">KOG2268</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01163" class="t">PF01163</a><span class="n">RIO1 family</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09202" class="t">PF09202</a><span class="n">Rio2, N-terminal</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018935" class="t">IPR018935</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018934" class="t">IPR018934</a><span class="n">missing_ipr018934</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000687" class="t">IPR000687</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015285" class="t">IPR015285</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:21:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:22:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8862">8862</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8862&pViewType=protein">8990</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1173548-1171783">scaffold_1:1171783-1173548 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_1_t20222_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:22:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:22:j_id58"><div class="term"><span class="t">KOG2268</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01163" class="t">PF01163</a><span class="n">RIO1 family</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09202" class="t">PF09202</a><span class="n">Rio2, N-terminal</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018935" class="t">IPR018935</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018934" class="t">IPR018934</a><span class="n">missing_ipr018934</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000687" class="t">IPR000687</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015285" class="t">IPR015285</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:22:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:23:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8866">8866</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8866&pViewType=protein">8994</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1183203-1181439">scaffold_1:1181439-1183203 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_1_t20226_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:23:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:23:j_id58"><div class="term"><span class="t">KOG2268</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09202" class="t">PF09202</a><span class="n">Rio2, N-terminal</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01163" class="t">PF01163</a><span class="n">RIO1 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018935" class="t">IPR018935</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018934" class="t">IPR018934</a><span class="n">missing_ipr018934</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000687" class="t">IPR000687</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015285" class="t">IPR015285</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:23:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:24:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8874">8874</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8874&pViewType=protein">9002</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1202846-1205664">scaffold_1:1202846-1205664 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1691_#_TRINITY_DN1830_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:24:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:24:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000961" class="t">IPR000961</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:24:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:25:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8876">8876</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8876&pViewType=protein">9004</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1211163-1210355">scaffold_1:1210355-1211163 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.474_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:25:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005509" class="t">GO:0005509</a> |
| <span class="n">calcium ion binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:25:j_id58"><div class="term"><span class="t">KOG0028</span><span class="n">Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00036" class="t">PF00036</a><span class="n">EF hand</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13499" class="t">PF13499</a><span class="n">EF-hand domain pair</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018247" class="t">IPR018247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002048" class="t">IPR002048</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011992" class="t">IPR011992</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=9.A.14.1.1&acc=P04000" class="t">9.A.14.1.1</a><span class="n">Long wave-sensitive opsin (red cone photoreceptor pigment)</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:25:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:26:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8894">8894</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8894&pViewType=protein">9022</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1257337-1256072">scaffold_1:1256072-1257337 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1759_#_TRINITY_DN2900_c2_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:26:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:26:j_id58"><div class="term"><span class="t">KOG1790</span><span class="n">60s ribosomal protein L34</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01199" class="t">PF01199</a><span class="n">Ribosomal protein L34e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008195" class="t">IPR008195</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:26:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:27:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8903">8903</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8903&pViewType=protein">9031</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1273575-1272648">scaffold_1:1272648-1273575 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1778_#_TRINITY_DN1672_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:27:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:27:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01165" class="t">PF01165</a><span class="n">Ribosomal protein S21</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001911" class="t">IPR001911</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:27:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:28:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8933">8933</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8933&pViewType=protein">9061</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1353645-1355726">scaffold_1:1353645-1355726 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.1.99.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:28:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0030488" class="t">GO:0030488</a> |
| <span class="n">tRNA methylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0031515" class="t">GO:0031515</a> |
| <span class="n">tRNA (m1A) methyltransferase complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:28:j_id58"><div class="term"><span class="t">KOG1416</span><span class="n">tRNA(1-methyladenosine) methyltransferase, subunit GCD10</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04189" class="t">PF04189</a><span class="n">Gcd10p family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017423" class="t">IPR017423</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:28:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:29:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8950">8950</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8950&pViewType=protein">9078</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1393853-1392534">scaffold_1:1392534-1393853 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_1892_#_TRINITY_DN3307_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:29:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015934" class="t">GO:0015934</a> |
| <span class="n">large ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:29:j_id58"><div class="term"><span class="t">KOG0846</span><span class="n">Mitochondrial/chloroplast ribosomal protein L15/L10</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00828" class="t">PF00828</a><span class="n">Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005749" class="t">IPR005749</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021131" class="t">IPR021131</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:29:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:30:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8958">8958</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8958&pViewType=protein">9086</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1414639-1416336">scaffold_1:1414639-1416336 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.551_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:30:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0017150" class="t">GO:0017150</a> |
| <span class="n">tRNA dihydrouridine synthase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0050660" class="t">GO:0050660</a> |
| <span class="n">flavin adenine dinucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0055114" class="t">GO:0055114</a> |
| <span class="n">obsolete oxidation-reduction process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:30:j_id58"><div class="term"><span class="t">KOG2334</span><span class="n">tRNA-dihydrouridine synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:1.3.1.91" class="t">EC:1.3.1.91</a><span class="n">tRNA-dihydrouridine20 synthase [NAD(P)+]</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01207" class="t">PF01207</a><span class="n">Dihydrouridine synthase (Dus)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001269" class="t">IPR001269</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018517" class="t">IPR018517</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:30:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:31:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=8978">8978</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=8978&pViewType=protein">9106</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1469039-1470636">scaffold_1:1469039-1470636 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.1.510.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:31:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:31:j_id58"><div class="term"><span class="t">KOG2874</span><span class="n">rRNA processing protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024166" class="t">IPR024166</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004088" class="t">IPR004088</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:31:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:32:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9006">9006</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9006&pViewType=protein">9134</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1534142-1533368">scaffold_1:1533368-1534142 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.595_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:32:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:32:j_id58"><div class="term"><span class="t">KOG3344</span><span class="n">40s ribosomal protein s10</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03501" class="t">PF03501</a><span class="n">Plectin/S10 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005326" class="t">IPR005326</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:32:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:33:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9009">9009</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9009&pViewType=protein">9137</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1538374-1544463">scaffold_1:1538374-1544463 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_2054_#_TRINITY_DN1238_c0_g3_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:33:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:33:j_id58"><div class="term"><span class="t">KOG1240</span><span class="n">Protein kinase containing WD40 repeats</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00400" class="t">PF00400</a><span class="n">WD domain, G-beta repeat</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017986" class="t">IPR017986</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019775" class="t">IPR019775</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001680" class="t">IPR001680</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:33:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:34:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9018">9018</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9018&pViewType=protein">9146</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1568100-1565697">scaffold_1:1565697-1568100 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_2095_#_TRINITY_DN1454_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:34:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:34:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:34:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:35:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9064">9064</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9064&pViewType=protein">9192</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1663405-1665378">scaffold_1:1663405-1665378 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_2261_#_TRINITY_DN1846_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:35:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0044237" class="t">GO:0044237</a> |
| <span class="n">cellular metabolic process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:35:j_id58"><div class="term"><span class="t">KOG1465</span><span class="n">Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01008" class="t">PF01008</a><span class="n">Initiation factor 2 subunit family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000649" class="t">IPR000649</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:35:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:36:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9123">9123</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9123&pViewType=protein">9251</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1801699-1802944">scaffold_1:1801699-1802944 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_2445_#_TRINITY_DN3017_c1_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:36:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:36:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01281" class="t">PF01281</a><span class="n">Ribosomal protein L9, N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020070" class="t">IPR020070</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009027" class="t">IPR009027</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:36:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:37:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9134">9134</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9134&pViewType=protein">9262</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1827943-1828724">scaffold_1:1827943-1828724 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.715_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:37:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:37:j_id58"><div class="term"><span class="t">KOG4600</span><span class="n">Mitochondrial ribosomal protein MRP7 (L2)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01016" class="t">PF01016</a><span class="n">Ribosomal L27 protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001684" class="t">IPR001684</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018261" class="t">IPR018261</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:37:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:38:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9149">9149</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9149&pViewType=protein">9277</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1860323-1861521">scaffold_1:1860323-1861521 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_2502_#_TRINITY_DN1369_c1_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:38:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:38:j_id58"><div class="term"><span class="t">KOG0893</span><span class="n">60S ribosomal protein L31</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01198" class="t">PF01198</a><span class="n">Ribosomal protein L31e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000054" class="t">IPR000054</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023621" class="t">IPR023621</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:38:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:39:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9150">9150</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9150&pViewType=protein">9278</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1863050-1861684">scaffold_1:1861684-1863050 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_2506_#_TRINITY_DN1885_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:39:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:39:j_id58"><div class="term"><span class="t">KOG0887</span><span class="n">60S ribosomal protein L35A/L37</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01247" class="t">PF01247</a><span class="n">Ribosomal protein L35Ae</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001780" class="t">IPR001780</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018266" class="t">IPR018266</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:39:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:40:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9162">9162</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9162&pViewType=protein">9290</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1887802-1891190">scaffold_1:1887802-1891190 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.1_#_2544_#_TRINITY_DN3532_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:40:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:40:j_id58"><div class="term"><span class="t">KOG2153</span><span class="n">Protein involved in the nuclear export of pre-ribosomes</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07540" class="t">PF07540</a><span class="n">Nucleolar complex-associated protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03914" class="t">PF03914</a><span class="n">CBF/Mak21 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005612" class="t">IPR005612</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011501" class="t">IPR011501</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:40:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:41:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9167">9167</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9167&pViewType=protein">9295</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1903948-1901722">scaffold_1:1901722-1903948 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.745_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:41:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004816" class="t">GO:0004816</a> |
| <span class="n">asparagine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006421" class="t">GO:0006421</a> |
| <span class="n">asparaginyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:41:j_id58"><div class="term"><span class="t">KOG0555</span><span class="n">Asparaginyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.22" class="t">EC:6.1.1.22</a><span class="n">asparagine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00152" class="t">PF00152</a><span class="n">tRNA synthetases class II (D, K and N)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01336" class="t">PF01336</a><span class="n">OB-fold nucleic acid binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004522" class="t">IPR004522</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004365" class="t">IPR004365</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002312" class="t">IPR002312</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004364" class="t">IPR004364</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:41:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:42:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9200">9200</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9200&pViewType=protein">9328</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:1993730-1995894">scaffold_1:1993730-1995894 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.1_#_429_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:42:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:42:j_id58"><div class="term"><span class="t">KOG0582</span><span class="n">Ste20-like serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:42:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:43:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9225">9225</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9225&pViewType=protein">9353</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:2055374-2053274">scaffold_1:2053274-2055374 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.1_#_339_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:43:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:43:j_id58"><div class="term"><span class="t">KOG2572</span><span class="n">Ribosome biogenesis protein - Nop58p/Nop5p</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08060" class="t">PF08060</a><span class="n">obsolete_pf08060</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08156" class="t">PF08156</a><span class="n">NOP5NT (NUC127) domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01798" class="t">PF01798</a><span class="n">snoRNA binding domain, fibrillarin</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002687" class="t">IPR002687</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012976" class="t">IPR012976</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012974" class="t">IPR012974</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:43:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:44:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9255">9255</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9255&pViewType=protein">9383</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:2120466-2123959">scaffold_1:2120466-2123959 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.1.327.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:44:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:44:j_id58"><div class="term"><span class="t">KOG0578</span><span class="n">p21-activated serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00786" class="t">PF00786</a><span class="n">P21-Rho-binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000095" class="t">IPR000095</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:44:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:45:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9265">9265</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9265&pViewType=protein">9393</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_1:2143598-2141700">scaffold_1:2141700-2143598 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_1_t30347_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:45:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:45:j_id58"><div class="term"><span class="t">KOG0407</span><span class="n">40S ribosomal protein S14</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00411" class="t">PF00411</a><span class="n">Ribosomal protein S11</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001971" class="t">IPR001971</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018102" class="t">IPR018102</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:45:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:46:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9342">9342</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9342&pViewType=protein">9470</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:113366-114313">scaffold_10:113366-114313 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.10_#_18_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:46:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:46:j_id58"><div class="term"><span class="t">KOG3403</span><span class="n">Translation initiation factor 1A (eIF-1A)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01176" class="t">PF01176</a><span class="n">Translation initiation factor 1A / IF-1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018104" class="t">IPR018104</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001253" class="t">IPR001253</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006196" class="t">IPR006196</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:46:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:47:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9348">9348</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9348&pViewType=protein">9476</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:127043-125940">scaffold_10:125940-127043 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_184_#_TRINITY_DN808_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:47:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:47:j_id58"><div class="term"><span class="t">KOG3446</span><span class="n">NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05047" class="t">PF05047</a><span class="n">Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012336" class="t">IPR012336</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007741" class="t">IPR007741</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016464" class="t">IPR016464</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=3.D.1.6.4&acc=P08739" class="t">3.D.1.6.4</a><span class="n">The green algal H+ translocating NADH dehydrogenase (NDH) complex (42 subunits; 33 included here) (Cardol et al., 2004)</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:47:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:48:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9351">9351</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9351&pViewType=protein">9479</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:130603-132125">scaffold_10:130603-132125 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_197_#_TRINITY_DN906_c0_g2_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:48:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:48:j_id58"><div class="term"><span class="t">KOG3424</span><span class="n">40S ribosomal protein S24</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01282" class="t">PF01282</a><span class="n">Ribosomal protein S24e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012678" class="t">IPR012678</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001976" class="t">IPR001976</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:48:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:49:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9370">9370</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9370&pViewType=protein">9498</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:178405-177946">scaffold_10:177946-178405 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.10_#_30_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:49:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:49:j_id58"><div class="term"><span class="t">KOG3435</span><span class="n">Mitochondrial/chloroplast ribosomal protein L54/L37</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08561" class="t">PF08561</a><span class="n">Mitochondrial ribosomal protein L37</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013870" class="t">IPR013870</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:49:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:50:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9384">9384</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9384&pViewType=protein">9512</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:214729-217509">scaffold_10:214729-217509 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_10_t10126_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:50:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:50:j_id58"><div class="term"><span class="t">KOG2256</span><span class="n">Predicted protein involved in nuclear export of pre-ribosomes</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03715" class="t">PF03715</a><span class="n">Noc2p family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005343" class="t">IPR005343</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:50:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:51:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9387">9387</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9387&pViewType=protein">9515</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:222097-219923">scaffold_10:219923-222097 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE93527_7793_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:51:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003747" class="t">GO:0003747</a> |
| <span class="n">translation release factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006415" class="t">GO:0006415</a> |
| <span class="n">translational termination</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016149" class="t">GO:0016149</a> |
| <span class="n">translation release factor activity, codon specific</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:51:j_id58"><div class="term"><span class="t">KOG2726</span><span class="n">Mitochondrial polypeptide chain release factor</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00472" class="t">PF00472</a><span class="n">RF-1 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03462" class="t">PF03462</a><span class="n">PCRF domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000352" class="t">IPR000352</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005139" class="t">IPR005139</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:51:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:52:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9404">9404</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9404&pViewType=protein">9532</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:254342-253111">scaffold_10:253111-254342 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_357_#_TRINITY_DN3461_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:52:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:52:j_id58"><div class="term"><span class="t">KOG1069</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp46</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01138" class="t">PF01138</a><span class="n">3' exoribonuclease family, domain 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001247" class="t">IPR001247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015847" class="t">IPR015847</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:52:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:53:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9423">9423</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9423&pViewType=protein">9551</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:292025-293259">scaffold_10:292025-293259 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.10_#_55_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:53:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:53:j_id58"><div class="term"><span class="t">KOG0590</span><span class="n">Checkpoint kinase and related serine/threonine protein kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:53:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:54:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9439">9439</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9439&pViewType=protein">9567</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:341085-337632">scaffold_10:337632-341085 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pg.C_100052_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:54:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:54:j_id58"><div class="term"><span class="t">KOG2590</span><span class="n">RNA-binding protein LARP/SRO9 and related La domain proteins</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05383" class="t">PF05383</a><span class="n">La domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006630" class="t">IPR006630</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:54:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:55:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9475">9475</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9475&pViewType=protein">9603</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:421636-422494">scaffold_10:421636-422494 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5609_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:55:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:55:j_id58"><div class="term"><span class="t">KOG0123</span><span class="n">Polyadenylate-binding protein (RRM superfamily)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:5.2.1.8" class="t">EC:5.2.1.8</a><span class="n">peptidylprolyl isomerase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00076" class="t">PF00076</a><span class="n">RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000504" class="t">IPR000504</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:55:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:56:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9488">9488</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9488&pViewType=protein">9616</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:448631-450113">scaffold_10:448631-450113 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_574_#_TRINITY_DN3409_c12_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:56:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:56:j_id58"><div class="term"><span class="t">KOG1612</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp42</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01138" class="t">PF01138</a><span class="n">3' exoribonuclease family, domain 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001247" class="t">IPR001247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015847" class="t">IPR015847</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:56:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:57:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9494">9494</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9494&pViewType=protein">9622</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:466210-463118">scaffold_10:463118-466210 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5627_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:57:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016428" class="t">GO:0016428</a> |
| <span class="n">tRNA (cytosine-5-)-methyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:57:j_id58"><div class="term"><span class="t">KOG2198</span><span class="n">tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.202" class="t">EC:2.1.1.202</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01189" class="t">PF01189</a><span class="n">16S rRNA methyltransferase RsmB/F</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018314" class="t">IPR018314</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023270" class="t">IPR023270</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001678" class="t">IPR001678</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023267" class="t">IPR023267</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:57:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:58:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9495">9495</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9495&pViewType=protein">9623</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:466383-471263">scaffold_10:466383-471263 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_592_#_TRINITY_DN1776_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:58:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004043" class="t">GO:0004043</a> |
| <span class="n">L-aminoadipate-semialdehyde dehydrogenase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008152" class="t">GO:0008152</a> |
| <span class="n">metabolic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009085" class="t">GO:0009085</a> |
| <span class="n">lysine biosynthetic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0031177" class="t">GO:0031177</a> |
| <span class="n">phosphopantetheine binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:58:j_id58"><div class="term"><span class="t">KOG1178</span><span class="n">Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:1.2.1.31" class="t">EC:1.2.1.31</a><span class="n">L-aminoadipate-semialdehyde dehydrogenase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07993" class="t">PF07993</a><span class="n">Male sterility protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13193" class="t">PF13193</a><span class="n">AMP-binding enzyme C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00501" class="t">PF00501</a><span class="n">AMP-binding enzyme</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00550" class="t">PF00550</a><span class="n">Phosphopantetheine attachment site</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013120" class="t">IPR013120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014397" class="t">IPR014397</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025110" class="t">IPR025110</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020845" class="t">IPR020845</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010071" class="t">IPR010071</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010080" class="t">IPR010080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000873" class="t">IPR000873</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009081" class="t">IPR009081</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006162" class="t">IPR006162</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020806" class="t">IPR020806</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:58:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:59:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9505">9505</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9505&pViewType=protein">9633</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:494833-493433">scaffold_10:493433-494833 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5638_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:59:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004540" class="t">GO:0004540</a> |
| <span class="n">RNA nuclease activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:59:j_id58"><div class="term"><span class="t">KOG2363</span><span class="n">Protein subunit of nuclear ribonuclease P (RNase P)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.26.5" class="t">EC:3.1.26.5</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01876" class="t">PF01876</a><span class="n">RNase P subunit p30</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016195" class="t">IPR016195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002738" class="t">IPR002738</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:59:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:60:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9516">9516</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9516&pViewType=protein">9644</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:517681-518614">scaffold_10:517681-518614 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_661_#_TRINITY_DN1253_c0_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:60:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:60:j_id58"><div class="term"><span class="t">KOG3499</span><span class="n">60S ribosomal protein L38</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01781" class="t">PF01781</a><span class="n">Ribosomal L38e protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002675" class="t">IPR002675</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:60:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:61:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9545">9545</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9545&pViewType=protein">9673</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:580188-581963">scaffold_10:580188-581963 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.10_#_128_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:61:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:61:j_id58"><div class="term"><span class="t">KOG4772</span><span class="n">Predicted tRNA-splicing endonuclease subunit</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12928" class="t">PF12928</a><span class="n">tRNA-splicing endonuclease subunit sen54 N-term</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024336" class="t">IPR024336</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:61:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:62:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9557">9557</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9557&pViewType=protein">9685</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:612445-610944">scaffold_10:610944-612445 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.10_#_96_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:62:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005509" class="t">GO:0005509</a> |
| <span class="n">calcium ion binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:62:j_id58"><div class="term"><span class="t">KOG0027</span><span class="n">Calmodulin and related proteins (EF-Hand superfamily)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13499" class="t">PF13499</a><span class="n">EF-hand domain pair</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018247" class="t">IPR018247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002048" class="t">IPR002048</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011992" class="t">IPR011992</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=9.A.14.1.1&acc=P04000" class="t">9.A.14.1.1</a><span class="n">Long wave-sensitive opsin (red cone photoreceptor pigment)</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:62:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:63:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9563">9563</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9563&pViewType=protein">9691</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:625862-623963">scaffold_10:623963-625862 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE105240_34657_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:63:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005852" class="t">GO:0005852</a> |
| <span class="n">eukaryotic translation initiation factor 3 complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:63:j_id58"><div class="term"><span class="t">KOG0122</span><span class="n">Translation initiation factor 3, subunit g (eIF-3g)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00076" class="t">PF00076</a><span class="n">RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12353" class="t">PF12353</a><span class="n">Eukaryotic translation initiation factor 3 subunit G</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017334" class="t">IPR017334</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024675" class="t">IPR024675</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000504" class="t">IPR000504</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:63:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:64:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9598">9598</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9598&pViewType=protein">9726</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:705866-709010">scaffold_10:705866-709010 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_956_#_TRINITY_DN3410_c0_g4_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:64:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003747" class="t">GO:0003747</a> |
| <span class="n">translation release factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006415" class="t">GO:0006415</a> |
| <span class="n">translational termination</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:64:j_id58"><div class="term"><span class="t">KOG0459</span><span class="n">Polypeptide release factor 3</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03143" class="t">PF03143</a><span class="n">Elongation factor Tu C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004160" class="t">IPR004160</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009001" class="t">IPR009001</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003285" class="t">IPR003285</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:64:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:65:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9632">9632</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9632&pViewType=protein">9760</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:784523-783648">scaffold_10:783648-784523 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_1059_#_TRINITY_DN2207_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:65:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:65:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12824" class="t">PF12824</a><span class="n">Mitochondrial ribosomal protein subunit L20</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024388" class="t">IPR024388</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:65:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:66:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9633">9633</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9633&pViewType=protein">9761</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:784481-790939">scaffold_10:784481-790939 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE112637_20861_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:66:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:66:j_id58"><div class="term"><span class="t">KOG1791</span><span class="n">Uncharacterized conserved protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf11707" class="t">PF11707</a><span class="n">Ribosome 60S biogenesis N-terminal</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021714" class="t">IPR021714</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:66:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:67:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9651">9651</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9651&pViewType=protein">9779</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:831889-830451">scaffold_10:830451-831889 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.10_#_1120_#_TRINITY_DN2765_c1_g4_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:67:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:67:j_id58"><div class="term"><span class="t">KOG1714</span><span class="n">60s ribosomal protein L18</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00828" class="t">PF00828</a><span class="n">Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021131" class="t">IPR021131</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021132" class="t">IPR021132</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:67:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:68:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9653">9653</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9653&pViewType=protein">9781</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_10:833879-834376">scaffold_10:833879-834376 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.10.515.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:68:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:68:j_id58"><div class="term"><span class="t">KOG1714</span><span class="n">60s ribosomal protein L18</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:68:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:69:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9717">9717</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9717&pViewType=protein">9845</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:60156-55989">scaffold_11:55989-60156 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_84_#_TRINITY_DN1038_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:69:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:69:j_id58"><div class="term"><span class="t">KOG0468</span><span class="n">U5 snRNP-specific protein</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.5.-" class="t">EC:3.6.5.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00679" class="t">PF00679</a><span class="n">Elongation factor G C-terminus</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03764" class="t">PF03764</a><span class="n">Elongation factor G, domain IV</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000640" class="t">IPR000640</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005517" class="t">IPR005517</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009022" class="t">IPR009022</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:69:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:70:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9735">9735</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9735&pViewType=protein">9863</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:108983-106733">scaffold_11:106733-108983 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_156_#_TRINITY_DN3057_c0_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:70:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003746" class="t">GO:0003746</a> |
| <span class="n">translation elongation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006414" class="t">GO:0006414</a> |
| <span class="n">translational elongation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:70:j_id58"><div class="term"><span class="t">KOG1627</span><span class="n">Translation elongation factor EF-1 gamma</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00043" class="t">PF00043</a><span class="n">Glutathione S-transferase, C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00647" class="t">PF00647</a><span class="n">Elongation factor 1 gamma, conserved domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13417" class="t">PF13417</a><span class="n">Glutathione S-transferase, N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004046" class="t">IPR004046</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001662" class="t">IPR001662</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010987" class="t">IPR010987</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012336" class="t">IPR012336</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004045" class="t">IPR004045</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:70:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:71:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9736">9736</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9736&pViewType=protein">9864</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:110990-108984">scaffold_11:108984-110990 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_159_#_TRINITY_DN3057_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:71:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003746" class="t">GO:0003746</a> |
| <span class="n">translation elongation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006414" class="t">GO:0006414</a> |
| <span class="n">translational elongation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:71:j_id58"><div class="term"><span class="t">KOG1627</span><span class="n">Translation elongation factor EF-1 gamma</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02798" class="t">PF02798</a><span class="n">Glutathione S-transferase, N-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00043" class="t">PF00043</a><span class="n">Glutathione S-transferase, C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00647" class="t">PF00647</a><span class="n">Elongation factor 1 gamma, conserved domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004046" class="t">IPR004046</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001662" class="t">IPR001662</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010987" class="t">IPR010987</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012336" class="t">IPR012336</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004045" class="t">IPR004045</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:71:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:72:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9765">9765</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9765&pViewType=protein">9893</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:176333-173565">scaffold_11:173565-176333 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_274_#_TRINITY_DN2915_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:72:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:72:j_id58"><div class="term"><span class="t">KOG0466</span><span class="n">Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.43" class="t">EC:2.1.1.43</a><span class="n">Transferred to 2.1.1.354 and 2.1.1.355 and 2.1.1.356 and 2.1.1.357 and 2.1.1.358 and 2.1.1.359 and 2.1.1.360 and 2.1.1.361 and 2.1.1.362</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09173" class="t">PF09173</a><span class="n">Initiation factor eIF2 gamma, C terminal</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015256" class="t">IPR015256</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009001" class="t">IPR009001</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:72:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:73:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9775">9775</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9775&pViewType=protein">9903</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:198396-200800">scaffold_11:198396-200800 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_313_#_TRINITY_DN1334_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:73:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:73:j_id58"><div class="term"><span class="t">KOG3184</span><span class="n">60S ribosomal protein L7</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08079" class="t">PF08079</a><span class="n">Ribosomal L30 N-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00327" class="t">PF00327</a><span class="n">Ribosomal protein L30p/L7e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018038" class="t">IPR018038</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012988" class="t">IPR012988</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016082" class="t">IPR016082</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005998" class="t">IPR005998</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:73:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:74:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9776">9776</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9776&pViewType=protein">9904</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:203172-201112">scaffold_11:201112-203172 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_320_#_TRINITY_DN2939_c1_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:74:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:1990904" class="t">GO:1990904</a> |
| <span class="n">ribonucleoprotein complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:74:j_id58"><div class="term"><span class="t">KOG3166</span><span class="n">60S ribosomal protein L7A</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01248" class="t">PF01248</a><span class="n">Ribosomal protein L7Ae/L30e/S12e/Gadd45 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004038" class="t">IPR004038</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004037" class="t">IPR004037</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018492" class="t">IPR018492</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001921" class="t">IPR001921</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029064" class="t">IPR029064</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:74:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:75:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9778">9778</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9778&pViewType=protein">9906</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:204682-203616">scaffold_11:203616-204682 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_324_#_TRINITY_DN2939_c2_g2_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:75:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:75:j_id58"><div class="term"><span class="t">KOG3452</span><span class="n">60S ribosomal protein L36</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01158" class="t">PF01158</a><span class="n">Ribosomal protein L36e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000509" class="t">IPR000509</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:75:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:76:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9781">9781</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9781&pViewType=protein">9909</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:215071-213818">scaffold_11:213818-215071 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_341_#_TRINITY_DN1193_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:76:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:76:j_id58"><div class="term"><span class="t">KOG1711</span><span class="n">Mitochondrial/chloroplast ribosomal protein L22</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00237" class="t">PF00237</a><span class="n">Ribosomal protein L22p/L17e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001063" class="t">IPR001063</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:76:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:77:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9831">9831</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9831&pViewType=protein">9959</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:349240-351494">scaffold_11:349240-351494 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_502_#_TRINITY_DN1172_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:77:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:77:j_id58"><div class="term"><span class="t">KOG0580</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:77:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:78:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9855">9855</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9855&pViewType=protein">9983</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:420051-423071">scaffold_11:420051-423071 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.11_#_74_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:78:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004817" class="t">GO:0004817</a> |
| <span class="n">cysteine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006423" class="t">GO:0006423</a> |
| <span class="n">cysteinyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:78:j_id58"><div class="term"><span class="t">KOG2007</span><span class="n">Cysteinyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.16" class="t">EC:6.1.1.16</a><span class="n">cysteine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01406" class="t">PF01406</a><span class="n">tRNA synthetases class I (C) catalytic domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015803" class="t">IPR015803</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024909" class="t">IPR024909</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:78:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:79:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9857">9857</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9857&pViewType=protein">9985</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:429444-428192">scaffold_11:428192-429444 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_615_#_TRINITY_DN1984_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:79:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019239" class="t">GO:0019239</a> |
| <span class="n">deaminase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:79:j_id58"><div class="term"><span class="t">KOG2317</span><span class="n">Putative translation initiation inhibitor UK114/IBM1</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.99.5" class="t">EC:3.5.99.5</a><span class="n">2-aminomuconate deaminase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01042" class="t">PF01042</a><span class="n">Endoribonuclease L-PSP</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013813" class="t">IPR013813</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006175" class="t">IPR006175</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006056" class="t">IPR006056</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:79:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:80:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9866">9866</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9866&pViewType=protein">9994</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:455311-453852">scaffold_11:453852-455311 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_645_#_TRINITY_DN1602_c0_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:80:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005730" class="t">GO:0005730</a> |
| <span class="n">nucleolus</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:80:j_id58"><div class="term"><span class="t">KOG3167</span><span class="n">Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01248" class="t">PF01248</a><span class="n">Ribosomal protein L7Ae/L30e/S12e/Gadd45 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004038" class="t">IPR004038</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018492" class="t">IPR018492</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002415" class="t">IPR002415</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029064" class="t">IPR029064</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:80:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:81:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9892">9892</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9892&pViewType=protein">10020</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:505091-507309">scaffold_11:505091-507309 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_11_t10303_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:81:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:81:j_id58"><div class="term"><span class="t">KOG2270</span><span class="n">Serine/threonine protein kinase involved in cell cycle control</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01163" class="t">PF01163</a><span class="n">RIO1 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018935" class="t">IPR018935</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017407" class="t">IPR017407</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018934" class="t">IPR018934</a><span class="n">missing_ipr018934</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000687" class="t">IPR000687</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:81:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:82:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9894">9894</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9894&pViewType=protein">10022</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:513266-514362">scaffold_11:513266-514362 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5998_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:82:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015934" class="t">GO:0015934</a> |
| <span class="n">large ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:82:j_id58"><div class="term"><span class="t">KOG3353</span><span class="n">60S ribosomal protein L22</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00237" class="t">PF00237</a><span class="n">Ribosomal protein L22p/L17e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005721" class="t">IPR005721</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018260" class="t">IPR018260</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001063" class="t">IPR001063</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:82:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:83:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9908">9908</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9908&pViewType=protein">10036</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:547305-546122">scaffold_11:546122-547305 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.11.576.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:83:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:83:j_id58"><div class="term"><span class="t">KOG0886</span><span class="n">40S ribosomal protein S2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00298" class="t">PF00298</a><span class="n">Ribosomal protein L11, RNA binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03946" class="t">PF03946</a><span class="n">Ribosomal protein L11, N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020785" class="t">IPR020785</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020783" class="t">IPR020783</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020784" class="t">IPR020784</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000911" class="t">IPR000911</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:83:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:84:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=9929">9929</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=9929&pViewType=protein">10057</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:598631-600413">scaffold_11:598631-600413 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.11.152.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:84:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004363" class="t">GO:0004363</a> |
| <span class="n">glutathione synthase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006750" class="t">GO:0006750</a> |
| <span class="n">glutathione biosynthetic process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:84:j_id58"><div class="term"><span class="t">KOG0021</span><span class="n">Glutathione synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.3.2.3" class="t">EC:6.3.2.3</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03917" class="t">PF03917</a><span class="n">Eukaryotic glutathione synthase, ATP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03199" class="t">PF03199</a><span class="n">Eukaryotic glutathione synthase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005615" class="t">IPR005615</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004887" class="t">IPR004887</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016185" class="t">IPR016185</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:84:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:85:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10003">10003</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10003&pViewType=protein">10131</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:767214-771755">scaffold_11:767214-771755 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.11.163.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:85:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:85:j_id58"><div class="term"><span class="t">KOG2102</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.13.-" class="t">EC:3.1.13.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00773" class="t">PF00773</a><span class="n">RNB domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022966" class="t">IPR022966</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:85:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:86:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10015">10015</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10015&pViewType=protein">10143</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:802195-800040">scaffold_11:800040-802195 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_1138_#_TRINITY_DN3442_c9_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:86:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:86:j_id58"><div class="term"><span class="t">KOG1475</span><span class="n">Ribosomal protein RPL1/RPL2/RL4L4</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14374" class="t">PF14374</a><span class="n">60S ribosomal protein L4 C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00573" class="t">PF00573</a><span class="n">Ribosomal protein L4/L1 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002136" class="t">IPR002136</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025755" class="t">IPR025755</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023574" class="t">IPR023574</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:86:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:87:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10016">10016</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10016&pViewType=protein">10144</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:802273-804440">scaffold_11:802273-804440 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_1143_#_TRINITY_DN3442_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:87:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006479" class="t">GO:0006479</a> |
| <span class="n">protein methylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:87:j_id58"><div class="term"><span class="t">KOG1499</span><span class="n">Protein arginine N-methyltransferase PRMT1 and related enzymes</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.-" class="t">EC:2.1.1.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06325" class="t">PF06325</a><span class="n">Ribosomal protein L11 methyltransferase (PrmA)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025799" class="t">IPR025799</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:87:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:88:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10026">10026</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10026&pViewType=protein">10154</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:828226-826746">scaffold_11:826746-828226 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_1171_#_TRINITY_DN2063_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:88:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:88:j_id58"><div class="term"><span class="t">KOG1751</span><span class="n">60s ribosomal protein L23</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00276" class="t">PF00276</a><span class="n">Ribosomal protein L23</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03939" class="t">PF03939</a><span class="n">Ribosomal protein L23, N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005633" class="t">IPR005633</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001014" class="t">IPR001014</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012678" class="t">IPR012678</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013025" class="t">IPR013025</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:88:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:89:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10055">10055</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10055&pViewType=protein">10183</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:891888-890840">scaffold_11:890840-891888 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.11_#_1253_#_TRINITY_DN762_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:89:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:89:j_id58"><div class="term"><span class="t">KOG0900</span><span class="n">40S ribosomal protein S20</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00338" class="t">PF00338</a><span class="n">Ribosomal protein S10p/S20e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027486" class="t">IPR027486</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005729" class="t">IPR005729</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001848" class="t">IPR001848</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:89:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:90:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10073">10073</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10073&pViewType=protein">10201</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_11:937209-938526">scaffold_11:937209-938526 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.11_#_149_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:90:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042256" class="t">GO:0042256</a> |
| <span class="n">cytosolic ribosome assembly</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043022" class="t">GO:0043022</a> |
| <span class="n">ribosome binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:90:j_id58"><div class="term"><span class="t">KOG3185</span><span class="n">Translation initiation factor 6 (eIF-6)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01912" class="t">PF01912</a><span class="n">eIF-6 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002769" class="t">IPR002769</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:90:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:91:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10074">10074</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10074&pViewType=protein">10202</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:1191-343">scaffold_12:343-1191 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.12.556.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:91:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:91:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:91:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:92:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10079">10079</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10079&pViewType=protein">10207</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:11520-9070">scaffold_12:9070-11520 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.12_#_1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:92:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004814" class="t">GO:0004814</a> |
| <span class="n">arginine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006420" class="t">GO:0006420</a> |
| <span class="n">arginyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:92:j_id58"><div class="term"><span class="t">KOG1195</span><span class="n">Arginyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.19" class="t">EC:6.1.1.19</a><span class="n">arginine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00750" class="t">PF00750</a><span class="n">tRNA synthetases class I (R)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05746" class="t">PF05746</a><span class="n">DALR anticodon binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005148" class="t">IPR005148</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001278" class="t">IPR001278</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008909" class="t">IPR008909</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:92:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:93:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10084">10084</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10084&pViewType=protein">10212</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:24506-21318">scaffold_12:21318-24506 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_12_t10016_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:93:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005634" class="t">GO:0005634</a> |
| <span class="n">nucleus</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:93:j_id58"><div class="term"><span class="t">KOG1980</span><span class="n">Uncharacterized conserved protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08142" class="t">PF08142</a><span class="n">AARP2CN (NUC121) domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04950" class="t">PF04950</a><span class="n">40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012948" class="t">IPR012948</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007034" class="t">IPR007034</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:93:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:94:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10092">10092</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10092&pViewType=protein">10220</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:44788-42726">scaffold_12:42726-44788 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">MIX5582_1202_33_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:94:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:94:j_id58"><div class="term"><span class="t">KOG0670</span><span class="n">U4/U6-associated splicing factor PRP4</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:94:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:95:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10098">10098</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10098&pViewType=protein">10226</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:60318-61237">scaffold_12:60318-61237 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gw1.12.623.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:95:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019843" class="t">GO:0019843</a> |
| <span class="n">rRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:95:j_id58"><div class="term"><span class="t">KOG4708</span><span class="n">Mitochondrial ribosomal protein MRP17</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01250" class="t">PF01250</a><span class="n">Ribosomal protein S6</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000529" class="t">IPR000529</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:95:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:96:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10103">10103</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10103&pViewType=protein">10231</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:76843-73051">scaffold_12:73051-76843 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.12.183.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:96:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016887" class="t">GO:0016887</a> |
| <span class="n">ATP hydrolysis activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:96:j_id58"><div class="term"><span class="t">KOG0062</span><span class="n">ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00385" class="t">PF00385</a><span class="n">Chromo (CHRromatin Organisation MOdifier) domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00005" class="t">PF00005</a><span class="n">ABC transporter</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021133" class="t">IPR021133</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003439" class="t">IPR003439</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016197" class="t">IPR016197</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023780" class="t">IPR023780</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003593" class="t">IPR003593</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017871" class="t">IPR017871</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:96:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:97:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10119">10119</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10119&pViewType=protein">10247</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:114637-115702">scaffold_12:114637-115702 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_192_#_TRINITY_DN3073_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:97:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003747" class="t">GO:0003747</a> |
| <span class="n">translation release factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006415" class="t">GO:0006415</a> |
| <span class="n">translational termination</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:97:j_id58"><div class="term"><span class="t">KOG2726</span><span class="n">Mitochondrial polypeptide chain release factor</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00472" class="t">PF00472</a><span class="n">RF-1 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000352" class="t">IPR000352</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:97:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:98:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10134">10134</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10134&pViewType=protein">10262</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:151726-154490">scaffold_12:151726-154490 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_249_#_TRINITY_DN2798_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:98:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:98:j_id58"><div class="term"><span class="t">KOG0668</span><span class="n">Casein kinase II, alpha subunit</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:98:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:99:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10144">10144</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10144&pViewType=protein">10272</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:181448-177212">scaffold_12:177212-181448 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_286_#_TRINITY_DN1814_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:99:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0002161" class="t">GO:0002161</a> |
| <span class="n">aminoacyl-tRNA editing activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004823" class="t">GO:0004823</a> |
| <span class="n">leucine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006429" class="t">GO:0006429</a> |
| <span class="n">leucyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:99:j_id58"><div class="term"><span class="t">KOG0437</span><span class="n">Leucyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.4" class="t">EC:6.1.1.4</a><span class="n">leucine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00133" class="t">PF00133</a><span class="n">tRNA synthetases class I (I, L, M and V)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08264" class="t">PF08264</a><span class="n">Anticodon-binding domain of tRNA ligase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002300" class="t">IPR002300</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009008" class="t">IPR009008</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004493" class="t">IPR004493</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013155" class="t">IPR013155</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:99:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:100:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10148">10148</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10148&pViewType=protein">10276</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:190331-188035">scaffold_12:188035-190331 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pm.C_120036_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:100:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:100:j_id58"><div class="term"><span class="t">KOG0668</span><span class="n">Casein kinase II, alpha subunit</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:100:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:101:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10161">10161</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10161&pViewType=protein">10289</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:215250-215989">scaffold_12:215250-215989 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_379_#_TRINITY_DN3354_c1_g2_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:101:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:101:j_id58"><div class="term"><span class="t">KOG3257</span><span class="n">Mitochondrial/chloroplast ribosomal protein L11</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00298" class="t">PF00298</a><span class="n">Ribosomal protein L11, RNA binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03946" class="t">PF03946</a><span class="n">Ribosomal protein L11, N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020783" class="t">IPR020783</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020784" class="t">IPR020784</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000911" class="t">IPR000911</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006519" class="t">IPR006519</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:101:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:102:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10246">10246</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10246&pViewType=protein">10374</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:422962-420730">scaffold_12:420730-422962 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_120158_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:102:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004828" class="t">GO:0004828</a> |
| <span class="n">serine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006434" class="t">GO:0006434</a> |
| <span class="n">seryl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:102:j_id58"><div class="term"><span class="t">KOG2509</span><span class="n">Seryl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.11" class="t">EC:6.1.1.11</a><span class="n">serine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00587" class="t">PF00587</a><span class="n">tRNA synthetase class II core domain (G, H, P, S and T)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02403" class="t">PF02403</a><span class="n">Seryl-tRNA synthetase N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010978" class="t">IPR010978</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015866" class="t">IPR015866</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002314" class="t">IPR002314</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002317" class="t">IPR002317</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:102:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:103:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10276">10276</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10276&pViewType=protein">10404</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:492598-490535">scaffold_12:490535-492598 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.12.3.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:103:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:103:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020556" class="t">IPR020556</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:103:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:104:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10277">10277</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10277&pViewType=protein">10405</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:495383-493180">scaffold_12:493180-495383 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.6343_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:104:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:104:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020556" class="t">IPR020556</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:104:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:105:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10320">10320</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10320&pViewType=protein">10448</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:594110-591619">scaffold_12:591619-594110 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_840_#_TRINITY_DN2931_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:105:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:105:j_id58"><div class="term"><span class="t">KOG2573</span><span class="n">Ribosome biogenesis protein - Nop56p/Sik1p</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08156" class="t">PF08156</a><span class="n">NOP5NT (NUC127) domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08060" class="t">PF08060</a><span class="n">obsolete_pf08060</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01798" class="t">PF01798</a><span class="n">snoRNA binding domain, fibrillarin</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002687" class="t">IPR002687</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012976" class="t">IPR012976</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012974" class="t">IPR012974</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:105:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:106:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10325">10325</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10325&pViewType=protein">10453</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:607944-609668">scaffold_12:607944-609668 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_853_#_TRINITY_DN1528_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:106:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:106:j_id58"><div class="term"><span class="t">KOG1628</span><span class="n">40S ribosomal protein S3A</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01015" class="t">PF01015</a><span class="n">Ribosomal S3Ae family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001593" class="t">IPR001593</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018281" class="t">IPR018281</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:106:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:107:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10348">10348</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10348&pViewType=protein">10476</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:663474-664708">scaffold_12:663474-664708 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_929_#_TRINITY_DN2530_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:107:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:107:j_id58"><div class="term"><span class="t">KOG3436</span><span class="n">60S ribosomal protein L35</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00831" class="t">PF00831</a><span class="n">Ribosomal L29 protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001854" class="t">IPR001854</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:107:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:108:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10362">10362</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10362&pViewType=protein">10490</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:694871-698887">scaffold_12:694871-698887 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_12_t10467_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:108:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016887" class="t">GO:0016887</a> |
| <span class="n">ATP hydrolysis activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:108:j_id58"><div class="term"><span class="t">KOG0062</span><span class="n">ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00005" class="t">PF00005</a><span class="n">ABC transporter</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00385" class="t">PF00385</a><span class="n">Chromo (CHRromatin Organisation MOdifier) domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003439" class="t">IPR003439</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000953" class="t">IPR000953</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016197" class="t">IPR016197</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023780" class="t">IPR023780</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003593" class="t">IPR003593</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017871" class="t">IPR017871</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:108:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:109:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10363">10363</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10363&pViewType=protein">10491</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:699690-700510">scaffold_12:699690-700510 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_12_t10464_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:109:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:109:j_id58"><div class="term"><span class="t">KOG0062</span><span class="n">ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:109:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:110:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10375">10375</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10375&pViewType=protein">10503</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:731398-729212">scaffold_12:729212-731398 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.6434_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:110:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006396" class="t">GO:0006396</a> |
| <span class="n">RNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008173" class="t">GO:0008173</a> |
| <span class="n">RNA methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0030697" class="t">GO:0030697</a> |
| <span class="n">S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:110:j_id58"><div class="term"><span class="t">KOG2187</span><span class="n">tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.35" class="t">EC:2.1.1.35</a><span class="n">tRNA (uracil54-C5)-methyltransferase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05958" class="t">PF05958</a><span class="n">tRNA (Uracil-5-)-methyltransferase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010280" class="t">IPR010280</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR030390" class="t">IPR030390</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025795" class="t">IPR025795</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:110:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:111:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10376">10376</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10376&pViewType=protein">10504</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:732253-731652">scaffold_12:731652-732253 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.6435_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:111:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:111:j_id58"><div class="term"><span class="t">KOG3464</span><span class="n">60S ribosomal protein L44</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00935" class="t">PF00935</a><span class="n">Ribosomal protein L44</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000552" class="t">IPR000552</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011332" class="t">IPR011332</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:111:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:112:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10403">10403</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10403&pViewType=protein">10531</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:804014-801171">scaffold_12:801171-804014 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.12.136.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:112:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006364" class="t">GO:0006364</a> |
| <span class="n">rRNA processing</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:112:j_id58"><div class="term"><span class="t">KOG0650</span><span class="n">WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08145" class="t">PF08145</a><span class="n">BOP1NT (NUC169) domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00400" class="t">PF00400</a><span class="n">WD domain, G-beta repeat</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017986" class="t">IPR017986</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012953" class="t">IPR012953</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019775" class="t">IPR019775</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001680" class="t">IPR001680</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:112:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:113:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10410">10410</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10410&pViewType=protein">10538</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:818580-819652">scaffold_12:818580-819652 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.12.581.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:113:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:113:j_id58"><div class="term"><span class="t">KOG0198</span><span class="n">MEKK and related serine/threonine protein kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001245" class="t">IPR001245</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=1.A.26.1.1&acc=Q45121" class="t">1.A.26.1.1</a><span class="n">Mg2+, Co2+ transporter, MgtE (Smith et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:113:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:114:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10417">10417</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10417&pViewType=protein">10545</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_12:834404-832741">scaffold_12:832741-834404 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.12_#_1124_#_TRINITY_DN3363_c2_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:114:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005634" class="t">GO:0005634</a> |
| <span class="n">nucleus</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042255" class="t">GO:0042255</a> |
| <span class="n">ribosome assembly</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:114:j_id58"><div class="term"><span class="t">KOG3492</span><span class="n">Ribosome biogenesis protein NIP7</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03657" class="t">PF03657</a><span class="n">UPF0113 PUA domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016686" class="t">IPR016686</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002478" class="t">IPR002478</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015947" class="t">IPR015947</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005155" class="t">IPR005155</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:114:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:115:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10465">10465</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10465&pViewType=protein">10593</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:61265-63421">scaffold_13:61265-63421 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_105_#_TRINITY_DN995_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:115:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016020" class="t">GO:0016020</a> |
| <span class="n">membrane</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0051205" class="t">GO:0051205</a> |
| <span class="n">protein insertion into membrane</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:115:j_id58"><div class="term"><span class="t">KOG1239</span><span class="n">Inner membrane protein translocase involved in respiratory chain assembly</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02096" class="t">PF02096</a><span class="n">60Kd inner membrane protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001708" class="t">IPR001708</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR028055" class="t">IPR028055</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=2.A.9.1.2&acc=Q15070" class="t">2.A.9.1.2</a><span class="n">Mammalian Oxa1L has a C-terminal 100 aa tail that binds ribosomes and promotes translation coupled membrane insertion (Haque et al., 2010).</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:115:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:116:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10527">10527</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10527&pViewType=protein">10655</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:216143-217741">scaffold_13:216143-217741 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_294_#_TRINITY_DN2369_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:116:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003746" class="t">GO:0003746</a> |
| <span class="n">translation elongation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006452" class="t">GO:0006452</a> |
| <span class="n">translational frameshifting</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043022" class="t">GO:0043022</a> |
| <span class="n">ribosome binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0045901" class="t">GO:0045901</a> |
| <span class="n">positive regulation of translational elongation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0045905" class="t">GO:0045905</a> |
| <span class="n">positive regulation of translational termination</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:116:j_id58"><div class="term"><span class="t">KOG3271</span><span class="n">Translation initiation factor 5A (eIF-5A)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00467" class="t">PF00467</a><span class="n">KOW motif</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01287" class="t">PF01287</a><span class="n">Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005824" class="t">IPR005824</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001884" class="t">IPR001884</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019769" class="t">IPR019769</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020189" class="t">IPR020189</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:116:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:117:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10530">10530</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10530&pViewType=protein">10658</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:225989-223612">scaffold_13:223612-225989 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.13_#_33_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:117:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:117:j_id58"><div class="term"><span class="t">KOG2522</span><span class="n">Filamentous baseplate protein Ligatin, contains PUA domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01253" class="t">PF01253</a><span class="n">Translation initiation factor SUI1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002478" class="t">IPR002478</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001950" class="t">IPR001950</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:117:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:118:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10596">10596</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10596&pViewType=protein">10724</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:412326-414034">scaffold_13:412326-414034 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_540_#_TRINITY_DN2796_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:118:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000154" class="t">GO:0000154</a> |
| <span class="n">rRNA modification</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000179" class="t">GO:0000179</a> |
| <span class="n">rRNA (adenine-N6,N6-)-dimethyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006364" class="t">GO:0006364</a> |
| <span class="n">rRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008649" class="t">GO:0008649</a> |
| <span class="n">rRNA methyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:118:j_id58"><div class="term"><span class="t">KOG0820</span><span class="n">Ribosomal RNA adenine dimethylase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.183" class="t">EC:2.1.1.183</a><span class="n">18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00398" class="t">PF00398</a><span class="n">Ribosomal RNA adenine dimethylase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020598" class="t">IPR020598</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011530" class="t">IPR011530</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001737" class="t">IPR001737</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:118:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:119:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10627">10627</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10627&pViewType=protein">10755</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:479053-478240">scaffold_13:478240-479053 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.13.169.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:119:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019843" class="t">GO:0019843</a> |
| <span class="n">rRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:119:j_id58"><div class="term"><span class="t">KOG3254</span><span class="n">Mitochondrial/chloroplast ribosomal protein L6</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00347" class="t">PF00347</a><span class="n">Ribosomal protein L6</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019906" class="t">IPR019906</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020040" class="t">IPR020040</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:119:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:120:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10630">10630</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10630&pViewType=protein">10758</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:483044-482575">scaffold_13:482575-483044 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.6671_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:120:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:120:j_id58"><div class="term"><span class="t">KOG0899</span><span class="n">Mitochondrial/chloroplast ribosomal protein S19</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00203" class="t">PF00203</a><span class="n">Ribosomal protein S19</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020934" class="t">IPR020934</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002222" class="t">IPR002222</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023575" class="t">IPR023575</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:120:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:121:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10631">10631</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10631&pViewType=protein">10759</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:484011-485260">scaffold_13:484011-485260 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_651_#_TRINITY_DN3396_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:121:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:121:j_id58"><div class="term"><span class="t">KOG0829</span><span class="n">60S ribosomal protein L18A</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01775" class="t">PF01775</a><span class="n">Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021138" class="t">IPR021138</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023573" class="t">IPR023573</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:121:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:122:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10644">10644</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10644&pViewType=protein">10772</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:502247-501721">scaffold_13:501721-502247 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.13.190.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:122:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:122:j_id58"><div class="term"><span class="t">KOG1741</span><span class="n">Mitochondrial/chloroplast ribosomal protein S14/S29</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00253" class="t">PF00253</a><span class="n">Ribosomal protein S14p/S29e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001209" class="t">IPR001209</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:122:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:123:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10684">10684</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10684&pViewType=protein">10812</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:591171-592083">scaffold_13:591171-592083 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE210485_132154_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:123:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:123:j_id58"><div class="term"><span class="t">KOG1732</span><span class="n">60S ribosomal protein L21</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01157" class="t">PF01157</a><span class="n">Ribosomal protein L21e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018259" class="t">IPR018259</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001147" class="t">IPR001147</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:123:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:124:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10696">10696</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10696&pViewType=protein">10824</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:620032-617716">scaffold_13:617716-620032 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_798_#_TRINITY_DN3453_c3_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:124:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0035556" class="t">GO:0035556</a> |
| <span class="n">intracellular signal transduction</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:124:j_id58"><div class="term"><span class="t">KOG0192</span><span class="n">Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00130" class="t">PF00130</a><span class="n">Phorbol esters/diacylglycerol binding domain (C1 domain)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002219" class="t">IPR002219</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:124:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:125:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10706">10706</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10706&pViewType=protein">10834</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:657491-659083">scaffold_13:657491-659083 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.6738_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:125:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0017150" class="t">GO:0017150</a> |
| <span class="n">tRNA dihydrouridine synthase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0050660" class="t">GO:0050660</a> |
| <span class="n">flavin adenine dinucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0055114" class="t">GO:0055114</a> |
| <span class="n">obsolete oxidation-reduction process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:125:j_id58"><div class="term"><span class="t">KOG2335</span><span class="n">tRNA-dihydrouridine synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:1.3.1.90" class="t">EC:1.3.1.90</a><span class="n">tRNA-dihydrouridine20a/20b synthase [NAD(P)+]</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01207" class="t">PF01207</a><span class="n">Dihydrouridine synthase (Dus)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001269" class="t">IPR001269</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018517" class="t">IPR018517</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:125:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:126:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10707">10707</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10707&pViewType=protein">10835</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:660736-658984">scaffold_13:658984-660736 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE212804_7246_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:126:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:126:j_id58"><div class="term"><span class="t">KOG2317</span><span class="n">Putative translation initiation inhibitor UK114/IBM1</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.3.1.14" class="t">EC:6.3.1.14</a><span class="n">diphthine---ammonia ligase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013813" class="t">IPR013813</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:126:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:127:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10717">10717</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10717&pViewType=protein">10845</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:683294-683869">scaffold_13:683294-683869 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.13_#_150_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:127:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:127:j_id58"><div class="term"><span class="t">KOG3419</span><span class="n">Mitochondrial/chloroplast ribosomal protein S16</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00886" class="t">PF00886</a><span class="n">Ribosomal protein S16</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023803" class="t">IPR023803</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000307" class="t">IPR000307</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:127:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:128:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10720">10720</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10720&pViewType=protein">10848</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:688418-689764">scaffold_13:688418-689764 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_903_#_TRINITY_DN3234_c2_g2_i9_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:128:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:128:j_id58"><div class="term"><span class="t">KOG3412</span><span class="n">60S ribosomal protein L28</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01778" class="t">PF01778</a><span class="n">Ribosomal L28e protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029004" class="t">IPR029004</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:128:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:129:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10727">10727</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10727&pViewType=protein">10855</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:701674-700994">scaffold_13:700994-701674 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gw1.13.281.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:129:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:129:j_id58"><div class="term"><span class="t">KOG0001</span><span class="n">Ubiquitin and ubiquitin-like proteins</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01020" class="t">PF01020</a><span class="n">Ribosomal L40e family</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00240" class="t">PF00240</a><span class="n">Ubiquitin family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019954" class="t">IPR019954</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029071" class="t">IPR029071</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019956" class="t">IPR019956</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001975" class="t">IPR001975</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000626" class="t">IPR000626</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:129:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:130:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10737">10737</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10737&pViewType=protein">10865</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:730550-731938">scaffold_13:730550-731938 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_956_#_TRINITY_DN3161_c0_g2_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:130:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019843" class="t">GO:0019843</a> |
| <span class="n">rRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:130:j_id58"><div class="term"><span class="t">KOG3301</span><span class="n">Ribosomal protein S4</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01479" class="t">PF01479</a><span class="n">S4 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00163" class="t">PF00163</a><span class="n">Ribosomal protein S4/S9 N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005710" class="t">IPR005710</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002942" class="t">IPR002942</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001912" class="t">IPR001912</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018079" class="t">IPR018079</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:130:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:131:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10752">10752</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10752&pViewType=protein">10880</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:765695-764150">scaffold_13:764150-765695 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE215238_7347_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:131:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:131:j_id58"><div class="term"><span class="t">KOG1068</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01138" class="t">PF01138</a><span class="n">3' exoribonuclease family, domain 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001247" class="t">IPR001247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015847" class="t">IPR015847</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:131:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:132:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10753">10753</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10753&pViewType=protein">10881</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_13:765704-769359">scaffold_13:765704-769359 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.13_#_1017_#_TRINITY_DN2140_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:132:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004818" class="t">GO:0004818</a> |
| <span class="n">glutamate-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006424" class="t">GO:0006424</a> |
| <span class="n">glutamyl-tRNA aminoacylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043039" class="t">GO:0043039</a> |
| <span class="n">tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:132:j_id58"><div class="term"><span class="t">KOG1147</span><span class="n">Glutamyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.17" class="t">EC:6.1.1.17</a><span class="n">glutamate---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00749" class="t">PF00749</a><span class="n">tRNA synthetases class I (E and Q), catalytic domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03950" class="t">PF03950</a><span class="n">tRNA synthetases class I (E and Q), anti-codon binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020059" class="t">IPR020059</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010987" class="t">IPR010987</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004526" class="t">IPR004526</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011035" class="t">IPR011035</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020058" class="t">IPR020058</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000924" class="t">IPR000924</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:132:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:133:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10842">10842</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10842&pViewType=protein">10970</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_14:234258-235956">scaffold_14:234258-235956 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.14.468.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:133:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:133:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:133:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:134:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10950">10950</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10950&pViewType=protein">11078</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_14:494469-495137">scaffold_14:494469-495137 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.14_#_596_#_TRINITY_DN3420_c2_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:134:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:134:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01632" class="t">PF01632</a><span class="n">Ribosomal protein L35</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021137" class="t">IPR021137</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018265" class="t">IPR018265</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001706" class="t">IPR001706</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:134:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:135:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10956">10956</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10956&pViewType=protein">11084</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_14:547381-545168">scaffold_14:545168-547381 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE246423_96011_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:135:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:135:j_id58"><div class="term"><span class="t">KOG0643</span><span class="n">Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00400" class="t">PF00400</a><span class="n">WD domain, G-beta repeat</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017986" class="t">IPR017986</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019775" class="t">IPR019775</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001680" class="t">IPR001680</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020472" class="t">IPR020472</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=C108.00" class="t">C108.00</a><span class="n">null</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:135:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:136:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=10983">10983</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=10983&pViewType=protein">11111</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_14:603988-602388">scaffold_14:602388-603988 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.14_#_778_#_TRINITY_DN3311_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:136:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:136:j_id58"><div class="term"><span class="t">KOG1685</span><span class="n">Uncharacterized conserved protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00687" class="t">PF00687</a><span class="n">Ribosomal protein L1p/L10e family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023674" class="t">IPR023674</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR028364" class="t">IPR028364</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:136:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:137:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11010">11010</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11010&pViewType=protein">11138</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_14:660997-659644">scaffold_14:659644-660997 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.14_#_903_#_TRINITY_DN3101_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:137:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005761" class="t">GO:0005761</a> |
| <span class="n">mitochondrial ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:137:j_id58"><div class="term"><span class="t">KOG3331</span><span class="n">Mitochondrial/chloroplast ribosomal protein L4/L29</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06984" class="t">PF06984</a><span class="n">Mitochondrial 39-S ribosomal protein L47 (MRP-L47)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010729" class="t">IPR010729</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:137:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:138:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11092">11092</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11092&pViewType=protein">11220</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:82286-82840">scaffold_15:82286-82840 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.15.152.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:138:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:138:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00327" class="t">PF00327</a><span class="n">Ribosomal protein L30p/L7e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016082" class="t">IPR016082</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:138:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:139:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11138">11138</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11138&pViewType=protein">11266</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:175017-173215">scaffold_15:173215-175017 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pm.C_150030_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:139:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:139:j_id58"><div class="term"><span class="t">KOG0400</span><span class="n">40S ribosomal protein S13</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00312" class="t">PF00312</a><span class="n">Ribosomal protein S15</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000589" class="t">IPR000589</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009068" class="t">IPR009068</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:139:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:140:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11141">11141</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11141&pViewType=protein">11269</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:180008-178349">scaffold_15:178349-180008 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_150079_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:140:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:140:j_id58"><div class="term"><span class="t">KOG0400</span><span class="n">40S ribosomal protein S13</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00312" class="t">PF00312</a><span class="n">Ribosomal protein S15</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08069" class="t">PF08069</a><span class="n">Ribosomal S13/S15 N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012606" class="t">IPR012606</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000589" class="t">IPR000589</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009068" class="t">IPR009068</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:140:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:141:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11142">11142</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11142&pViewType=protein">11270</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:180654-182021">scaffold_15:180654-182021 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.15_#_291_#_TRINITY_DN3166_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:141:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:141:j_id58"><div class="term"><span class="t">KOG1646</span><span class="n">40S ribosomal protein S6</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01092" class="t">PF01092</a><span class="n">Ribosomal protein S6e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001377" class="t">IPR001377</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014401" class="t">IPR014401</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:141:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:142:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11143">11143</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11143&pViewType=protein">11271</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:182055-183930">scaffold_15:182055-183930 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_150081_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:142:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:142:j_id58"><div class="term"><span class="t">KOG1646</span><span class="n">40S ribosomal protein S6</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:142:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:143:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11166">11166</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11166&pViewType=protein">11294</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:241248-242195">scaffold_15:241248-242195 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.15_#_373_#_TRINITY_DN211_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:143:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004540" class="t">GO:0004540</a> |
| <span class="n">RNA nuclease activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:143:j_id58"><div class="term"><span class="t">KOG4639</span><span class="n">RNase P/RNase MRP subunit POP5</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.26.5" class="t">EC:3.1.26.5</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01900" class="t">PF01900</a><span class="n">Rpp14/Pop5 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002759" class="t">IPR002759</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:143:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:144:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11186">11186</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11186&pViewType=protein">11314</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:291794-296985">scaffold_15:291794-296985 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE272226_33070_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:144:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:144:j_id58"><div class="term"><span class="t">KOG1166</span><span class="n">Mitotic checkpoint serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08311" class="t">PF08311</a><span class="n">Mad3/BUB1 homology region 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013212" class="t">IPR013212</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:144:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:145:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11206">11206</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11206&pViewType=protein">11334</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:333170-331690">scaffold_15:331690-333170 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE273295_211859_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:145:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:145:j_id58"><div class="term"><span class="t">KOG1694</span><span class="n">60s ribosomal protein L6</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01159" class="t">PF01159</a><span class="n">Ribosomal protein L6e</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03868" class="t">PF03868</a><span class="n">Ribosomal protein L6, N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005568" class="t">IPR005568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000915" class="t">IPR000915</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:145:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:146:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11224">11224</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11224&pViewType=protein">11352</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:377577-382301">scaffold_15:377577-382301 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE274275_18199_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:146:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:146:j_id58"><div class="term"><span class="t">KOG2021</span><span class="n">Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08389" class="t">PF08389</a><span class="n">Exportin 1-like protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013598" class="t">IPR013598</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=9.A.50.1.1&acc=P32835" class="t">9.A.50.1.1</a><span class="n">The tRNA nuclear export machinery, t-Exporter</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:146:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:147:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11242">11242</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11242&pViewType=protein">11370</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:417421-420235">scaffold_15:417421-420235 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">MIX9867_9380_43_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:147:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004809" class="t">GO:0004809</a> |
| <span class="n">tRNA (guanine-N2-)-methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:147:j_id58"><div class="term"><span class="t">KOG1253</span><span class="n">tRNA methyltransferase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02005" class="t">PF02005</a><span class="n">N2,N2-dimethylguanosine tRNA methyltransferase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002905" class="t">IPR002905</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:147:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:148:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11255">11255</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11255&pViewType=protein">11383</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:458953-460669">scaffold_15:458953-460669 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.15.72.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:148:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016429" class="t">GO:0016429</a> |
| <span class="n">tRNA (adenine-N1-)-methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0030488" class="t">GO:0030488</a> |
| <span class="n">tRNA methylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0031515" class="t">GO:0031515</a> |
| <span class="n">tRNA (m1A) methyltransferase complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:148:j_id58"><div class="term"><span class="t">KOG2915</span><span class="n">tRNA(1-methyladenosine) methyltransferase, subunit GCD14</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08704" class="t">PF08704</a><span class="n">tRNA methyltransferase complex GCD14 subunit</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014816" class="t">IPR014816</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:148:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:149:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11274">11274</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11274&pViewType=protein">11402</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_15:509494-508444">scaffold_15:508444-509494 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE278837_293407_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:149:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:149:j_id58"><div class="term"><span class="t">KOG1753</span><span class="n">40S ribosomal protein S16</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00380" class="t">PF00380</a><span class="n">Ribosomal protein S9/S16</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000754" class="t">IPR000754</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020574" class="t">IPR020574</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:149:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:150:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11354">11354</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11354&pViewType=protein">11482</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:14214-16255">scaffold_16:14214-16255 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.16.45.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:150:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:150:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:150:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:151:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11356">11356</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11356&pViewType=protein">11484</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:19907-17852">scaffold_16:17852-19907 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.16.98.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:151:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:151:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:151:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:152:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11368">11368</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11368&pViewType=protein">11496</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:45858-47950">scaffold_16:45858-47950 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_160028_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:152:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:152:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:152:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:153:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11374">11374</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11374&pViewType=protein">11502</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:57715-56250">scaffold_16:56250-57715 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.16_#_98_#_TRINITY_DN2945_c2_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:153:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:153:j_id58"><div class="term"><span class="t">KOG1670</span><span class="n">Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01652" class="t">PF01652</a><span class="n">Eukaryotic initiation factor 4E</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001040" class="t">IPR001040</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023398" class="t">IPR023398</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:153:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:154:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11425">11425</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11425&pViewType=protein">11553</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:212023-214879">scaffold_16:212023-214879 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.16_#_391_#_TRINITY_DN3285_c2_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:154:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:154:j_id58"><div class="term"><span class="t">KOG0590</span><span class="n">Checkpoint kinase and related serine/threonine protein kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:154:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:155:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11434">11434</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11434&pViewType=protein">11562</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:233652-232236">scaffold_16:232236-233652 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE303800_3153_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:155:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:155:j_id58"><div class="term"><span class="t">KOG3017</span><span class="n">Defense-related protein containing SCP domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00188" class="t">PF00188</a><span class="n">Cysteine-rich secretory protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001283" class="t">IPR001283</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014044" class="t">IPR014044</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=8.B.9.1.1&acc=Q8JI39" class="t">8.B.9.1.1</a><span class="n">Cycseine-rich venom protein, Triflin. Blocks contraction of smooth muscle elicited by high potassium-induced depolarization. May also target voltage-gated calcium channels (Cav) in smooth muscle cells. The crystal structure of triflin, a snake</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:155:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:156:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11436">11436</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11436&pViewType=protein">11564</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:239400-236980">scaffold_16:236980-239400 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.16_#_39_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:156:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016874" class="t">GO:0016874</a> |
| <span class="n">ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:156:j_id58"><div class="term"><span class="t">KOG2438</span><span class="n">Glutamyl-tRNA amidotransferase subunit B</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02934" class="t">PF02934</a><span class="n">GatB/GatE catalytic domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02637" class="t">PF02637</a><span class="n">GatB domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018027" class="t">IPR018027</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003789" class="t">IPR003789</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004413" class="t">IPR004413</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006075" class="t">IPR006075</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017958" class="t">IPR017958</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:156:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:157:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11459">11459</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11459&pViewType=protein">11587</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:299717-296595">scaffold_16:296595-299717 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.16_#_551_#_TRINITY_DN3447_c4_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:157:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:157:j_id58"><div class="term"><span class="t">KOG0598</span><span class="n">Ribosomal protein S6 kinase and related proteins</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00433" class="t">PF00433</a><span class="n">Protein kinase C terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000961" class="t">IPR000961</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017892" class="t">IPR017892</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:157:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:158:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11486">11486</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11486&pViewType=protein">11614</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:359181-362196">scaffold_16:359181-362196 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.16_#_684_#_TRINITY_DN2421_c0_g1_i8_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:158:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004827" class="t">GO:0004827</a> |
| <span class="n">proline-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006433" class="t">GO:0006433</a> |
| <span class="n">prolyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:158:j_id58"><div class="term"><span class="t">KOG4163</span><span class="n">Prolyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.15" class="t">EC:6.1.1.15</a><span class="n">proline---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09180" class="t">PF09180</a><span class="n">Prolyl-tRNA synthetase, C-terminal</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00587" class="t">PF00587</a><span class="n">tRNA synthetase class II core domain (G, H, P, S and T)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03129" class="t">PF03129</a><span class="n">Anticodon binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004499" class="t">IPR004499</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017449" class="t">IPR017449</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002314" class="t">IPR002314</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016061" class="t">IPR016061</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002316" class="t">IPR002316</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004154" class="t">IPR004154</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:158:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:159:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11491">11491</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11491&pViewType=protein">11619</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:371787-373677">scaffold_16:371787-373677 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE311322_33066_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:159:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:159:j_id58"><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.-" class="t">EC:2.1.1.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00398" class="t">PF00398</a><span class="n">Ribosomal RNA adenine dimethylase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001737" class="t">IPR001737</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:159:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:160:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11522">11522</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11522&pViewType=protein">11650</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:442723-440862">scaffold_16:440862-442723 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.16_#_840_#_TRINITY_DN2289_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:160:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:160:j_id58"><div class="term"><span class="t">KOG3064</span><span class="n">RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04874" class="t">PF04874</a><span class="n">Mak16 protein C-terminal region</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01778" class="t">PF01778</a><span class="n">Ribosomal L28e protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006958" class="t">IPR006958</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029004" class="t">IPR029004</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:160:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:161:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11526">11526</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11526&pViewType=protein">11654</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:452325-451203">scaffold_16:451203-452325 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_160170_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:161:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:161:j_id58"><div class="term"><span class="t">KOG0453</span><span class="n">Aconitase/homoaconitase (aconitase superfamily)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR028909" class="t">IPR028909</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:161:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:162:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11527">11527</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11527&pViewType=protein">11655</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_16:452393-454134">scaffold_16:452393-454134 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.7515_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:162:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000049" class="t">GO:0000049</a> |
| <span class="n">tRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:162:j_id58"><div class="term"><span class="t">KOG2241</span><span class="n">tRNA-binding protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01588" class="t">PF01588</a><span class="n">Putative tRNA binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00043" class="t">PF00043</a><span class="n">Glutathione S-transferase, C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004046" class="t">IPR004046</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010987" class="t">IPR010987</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002547" class="t">IPR002547</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:162:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:163:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11626">11626</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11626&pViewType=protein">11754</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:234851-232790">scaffold_17:232790-234851 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.17.105.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:163:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:163:j_id58"><div class="term"><span class="t">KOG1384</span><span class="n">tRNA delta(2)-isopentenylpyrophosphate transferase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.5.1.75" class="t">EC:2.5.1.75</a><span class="n">tRNA dimethylallyltransferase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01715" class="t">PF01715</a><span class="n">IPP transferase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018022" class="t">IPR018022</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:163:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:164:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11634">11634</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11634&pViewType=protein">11762</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:248086-246375">scaffold_17:246375-248086 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE338583_6862_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:164:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0001522" class="t">GO:0001522</a> |
| <span class="n">pseudouridine synthesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:164:j_id58"><div class="term"><span class="t">KOG2236</span><span class="n">Uncharacterized conserved protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04410" class="t">PF04410</a><span class="n">Gar1/Naf1 RNA binding region</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007504" class="t">IPR007504</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:164:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:165:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11635">11635</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11635&pViewType=protein">11763</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:248582-249766">scaffold_17:248582-249766 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.7619_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:165:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003746" class="t">GO:0003746</a> |
| <span class="n">translation elongation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006414" class="t">GO:0006414</a> |
| <span class="n">translational elongation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:165:j_id58"><div class="term"><span class="t">KOG1071</span><span class="n">Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00889" class="t">PF00889</a><span class="n">Elongation factor TS</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014039" class="t">IPR014039</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:165:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:166:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11656">11656</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11656&pViewType=protein">11784</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:298423-301389">scaffold_17:298423-301389 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.17_#_491_#_TRINITY_DN2891_c2_g1_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:166:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:166:j_id58"><div class="term"><span class="t">KOG1461</span><span class="n">Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00132" class="t">PF00132</a><span class="n">Bacterial transferase hexapeptide (six repeats)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02020" class="t">PF02020</a><span class="n">eIF4-gamma/eIF5/eIF2-epsilon</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001451" class="t">IPR001451</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003307" class="t">IPR003307</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011004" class="t">IPR011004</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029044" class="t">IPR029044</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:166:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:167:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11671">11671</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11671&pViewType=protein">11799</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:350485-349176">scaffold_17:349176-350485 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_170218_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:167:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:167:j_id58"><div class="term"><span class="t">KOG2975</span><span class="n">Translation initiation factor 3, subunit f (eIF-3f)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01398" class="t">PF01398</a><span class="n">JAB1/Mov34/MPN/PAD-1 ubiquitin protease</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13012" class="t">PF13012</a><span class="n">Maintenance of mitochondrial structure and function</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024969" class="t">IPR024969</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000555" class="t">IPR000555</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=M67.UNW" class="t">M67.UNW</a><span class="n">M67.UNW</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:167:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:168:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11690">11690</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11690&pViewType=protein">11818</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:393900-395312">scaffold_17:393900-395312 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.17_#_633_#_TRINITY_DN3319_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:168:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:168:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12923" class="t">PF12923</a><span class="n">Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024326" class="t">IPR024326</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:168:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:169:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11700">11700</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11700&pViewType=protein">11828</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:411009-411517">scaffold_17:411009-411517 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.7684_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:169:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:169:j_id58"><div class="term"><span class="t">KOG3445</span><span class="n">Mitochondrial/chloroplast ribosomal protein 36a</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05047" class="t">PF05047</a><span class="n">Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012336" class="t">IPR012336</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007741" class="t">IPR007741</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:169:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:170:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11731">11731</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11731&pViewType=protein">11859</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:501019-499900">scaffold_17:499900-501019 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.17_#_776_#_TRINITY_DN3447_c1_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:170:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:170:j_id58"><div class="term"><span class="t">KOG3203</span><span class="n">Mitochondrial/chloroplast ribosomal protein L13</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00572" class="t">PF00572</a><span class="n">Ribosomal protein L13</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005823" class="t">IPR005823</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005822" class="t">IPR005822</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023564" class="t">IPR023564</a><span class="n">missing_ipr023564</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023563" class="t">IPR023563</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:170:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:171:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11763">11763</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11763&pViewType=protein">11891</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_17:577272-575413">scaffold_17:575413-577272 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.17_#_871_#_TRINITY_DN2961_c1_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:171:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003725" class="t">GO:0003725</a> |
| <span class="n">double-stranded RNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:171:j_id58"><div class="term"><span class="t">KOG3051</span><span class="n">RNA binding/translational regulation protein of the SUA5 family</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.7.87" class="t">EC:2.7.7.87</a><span class="n">L-threonylcarbamoyladenylate synthase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01300" class="t">PF01300</a><span class="n">Telomere recombination</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03481" class="t">PF03481</a><span class="n">Threonylcarbamoyl-AMP synthase, C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006070" class="t">IPR006070</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017945" class="t">IPR017945</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005145" class="t">IPR005145</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:171:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:172:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11861">11861</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11861&pViewType=protein">11989</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_18:236934-234419">scaffold_18:234419-236934 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE358460_24936_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:172:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:172:j_id58"><div class="term"><span class="t">KOG1487</span><span class="n">GTP-binding protein DRG1 (ODN superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02824" class="t">PF02824</a><span class="n">TGS domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012676" class="t">IPR012676</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004095" class="t">IPR004095</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006074" class="t">IPR006074</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:172:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:173:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11869">11869</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11869&pViewType=protein">11997</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_18:251073-248287">scaffold_18:248287-251073 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE359000_19764_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:173:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:173:j_id58"><div class="term"><span class="t">KOG3791</span><span class="n">Predicted RNA-binding protein involved in translational regulation</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07647" class="t">PF07647</a><span class="n">SAM domain (Sterile alpha motif)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001660" class="t">IPR001660</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011510" class="t">IPR011510</a><span class="n">missing_ipr011510</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013761" class="t">IPR013761</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:173:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:174:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11889">11889</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11889&pViewType=protein">12017</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_18:303121-301660">scaffold_18:301660-303121 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE360523_162431_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:174:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:174:j_id58"><div class="term"><span class="t">KOG1742</span><span class="n">60s ribosomal protein L15/L27</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00828" class="t">PF00828</a><span class="n">Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021131" class="t">IPR021131</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001196" class="t">IPR001196</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:174:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:175:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11899">11899</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11899&pViewType=protein">12027</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_18:324086-325765">scaffold_18:324086-325765 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.18.76.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:175:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009058" class="t">GO:0009058</a> |
| <span class="n">biosynthetic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016742" class="t">GO:0016742</a> |
| <span class="n">hydroxymethyl-, formyl- and related transferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:175:j_id58"><div class="term"><span class="t">KOG3082</span><span class="n">Methionyl-tRNA formyltransferase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.2.9" class="t">EC:2.1.2.9</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00551" class="t">PF00551</a><span class="n">Formyl transferase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02911" class="t">PF02911</a><span class="n">Formyl transferase, C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002376" class="t">IPR002376</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005793" class="t">IPR005793</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011034" class="t">IPR011034</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:175:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:176:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11915">11915</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11915&pViewType=protein">12043</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:22488-20939">scaffold_2:20939-22488 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_43_#_TRINITY_DN3052_c2_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:176:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:176:j_id58"><div class="term"><span class="t">KOG1749</span><span class="n">40S ribosomal protein S23</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00164" class="t">PF00164</a><span class="n">Ribosomal protein S12/S23</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006032" class="t">IPR006032</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005680" class="t">IPR005680</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:176:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:177:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11939">11939</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11939&pViewType=protein">12067</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:78725-77503">scaffold_2:77503-78725 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_135_#_TRINITY_DN1777_c1_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:177:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:177:j_id58"><div class="term"><span class="t">KOG1004</span><span class="n">Exosomal 3'-5' exoribonuclease complex subunit Rrp40</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004088" class="t">IPR004088</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:177:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:178:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11945">11945</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11945&pViewType=protein">12073</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:88780-92638">scaffold_2:88780-92638 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_152_#_TRINITY_DN2472_c0_g1_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:178:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004824" class="t">GO:0004824</a> |
| <span class="n">lysine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006430" class="t">GO:0006430</a> |
| <span class="n">lysyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:178:j_id58"><div class="term"><span class="t">KOG1885</span><span class="n">Lysyl-tRNA synthetase (class II)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.6" class="t">EC:6.1.1.6</a><span class="n">lysine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00152" class="t">PF00152</a><span class="n">tRNA synthetases class II (D, K and N)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01336" class="t">PF01336</a><span class="n">OB-fold nucleic acid binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018149" class="t">IPR018149</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004365" class="t">IPR004365</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002313" class="t">IPR002313</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004364" class="t">IPR004364</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:178:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:179:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11973">11973</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11973&pViewType=protein">12101</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:154642-158086">scaffold_2:154642-158086 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_241_#_TRINITY_DN2570_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:179:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004813" class="t">GO:0004813</a> |
| <span class="n">alanine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006419" class="t">GO:0006419</a> |
| <span class="n">alanyl-tRNA aminoacylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043039" class="t">GO:0043039</a> |
| <span class="n">tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:179:j_id58"><div class="term"><span class="t">KOG0188</span><span class="n">Alanyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.7" class="t">EC:6.1.1.7</a><span class="n">alanine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01411" class="t">PF01411</a><span class="n">tRNA synthetases class II (A)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07973" class="t">PF07973</a><span class="n">Threonyl and Alanyl tRNA synthetase second additional domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02272" class="t">PF02272</a><span class="n">DHHA1 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003156" class="t">IPR003156</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012947" class="t">IPR012947</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018163" class="t">IPR018163</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018162" class="t">IPR018162</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018165" class="t">IPR018165</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018164" class="t">IPR018164</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002318" class="t">IPR002318</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:179:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:180:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=11984">11984</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=11984&pViewType=protein">12112</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:174397-173166">scaffold_2:173166-174397 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_279_#_TRINITY_DN1970_c0_g1_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:180:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:180:j_id58"><div class="term"><span class="t">KOG1068</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01138" class="t">PF01138</a><span class="n">3' exoribonuclease family, domain 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001247" class="t">IPR001247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015847" class="t">IPR015847</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:180:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:181:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12004">12004</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12004&pViewType=protein">12132</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:217154-218587">scaffold_2:217154-218587 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.2_#_43_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:181:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:181:j_id58"><div class="term"><span class="t">KOG2768</span><span class="n">Translation initiation factor 2, beta subunit (eIF-2beta)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01873" class="t">PF01873</a><span class="n">Domain found in IF2B/IF5</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016190" class="t">IPR016190</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002735" class="t">IPR002735</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016189" class="t">IPR016189</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:181:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:182:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12030">12030</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12030&pViewType=protein">12158</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:288003-286460">scaffold_2:286460-288003 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_2_t10110_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:182:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:182:j_id58"><div class="term"><span class="t">KOG2768</span><span class="n">Translation initiation factor 2, beta subunit (eIF-2beta)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01873" class="t">PF01873</a><span class="n">Domain found in IF2B/IF5</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002735" class="t">IPR002735</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016189" class="t">IPR016189</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:182:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:183:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12039">12039</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12039&pViewType=protein">12167</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:311369-309086">scaffold_2:309086-311369 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pm.C_20068_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:183:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:183:j_id58"><div class="term"><span class="t">KOG2613</span><span class="n">NMD protein affecting ribosome stability and mRNA decay</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04981" class="t">PF04981</a><span class="n">NMD3 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007064" class="t">IPR007064</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:183:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:184:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12081">12081</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12081&pViewType=protein">12209</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:412641-411758">scaffold_2:411758-412641 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_673_#_TRINITY_DN1381_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:184:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:184:j_id58"><div class="term"><span class="t">KOG4756</span><span class="n">Mitochondrial ribosomal protein L27</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09809" class="t">PF09809</a><span class="n">Mitochondrial ribosomal protein L27</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019189" class="t">IPR019189</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:184:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:185:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12085">12085</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12085&pViewType=protein">12213</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:421073-418976">scaffold_2:418976-421073 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1027_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:185:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:185:j_id58"><div class="term"><span class="t">KOG1489</span><span class="n">Predicted GTP-binding protein (ODN superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01018" class="t">PF01018</a><span class="n">GTP1/OBG</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006169" class="t">IPR006169</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:185:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:186:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12123">12123</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12123&pViewType=protein">12251</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:513104-511192">scaffold_2:511192-513104 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_778_#_TRINITY_DN3077_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:186:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004816" class="t">GO:0004816</a> |
| <span class="n">asparagine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006421" class="t">GO:0006421</a> |
| <span class="n">asparaginyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:186:j_id58"><div class="term"><span class="t">KOG0554</span><span class="n">Asparaginyl-tRNA synthetase (mitochondrial)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.22" class="t">EC:6.1.1.22</a><span class="n">asparagine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01336" class="t">PF01336</a><span class="n">OB-fold nucleic acid binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00152" class="t">PF00152</a><span class="n">tRNA synthetases class II (D, K and N)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004522" class="t">IPR004522</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004365" class="t">IPR004365</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002312" class="t">IPR002312</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004364" class="t">IPR004364</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:186:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:187:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12133">12133</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12133&pViewType=protein">12261</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:533805-534326">scaffold_2:533805-534326 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.2_#_117_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:187:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:187:j_id58"><div class="term"><span class="t">KOG3278</span><span class="n">Mitochondrial/chloroplast ribosomal protein L28</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00830" class="t">PF00830</a><span class="n">Ribosomal L28 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001383" class="t">IPR001383</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:187:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:188:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12137">12137</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12137&pViewType=protein">12265</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:542462-541398">scaffold_2:541398-542462 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_2_t10359_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:188:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006388" class="t">GO:0006388</a> |
| <span class="n">tRNA splicing, via endonucleolytic cleavage and ligation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:188:j_id58"><div class="term"><span class="t">KOG2278</span><span class="n">RNA:NAD 2'-phosphotransferase TPT1</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.1.160" class="t">EC:2.7.1.160</a><span class="n">2'-phosphotransferase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01885" class="t">PF01885</a><span class="n">RNA 2'-phosphotransferase, Tpt1 / KptA family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002745" class="t">IPR002745</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:188:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:189:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12139">12139</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12139&pViewType=protein">12267</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:545294-546306">scaffold_2:545294-546306 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.2.1161.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:189:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:189:j_id58"><div class="term"><span class="t">KOG0857</span><span class="n">60s ribosomal protein L10</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00252" class="t">PF00252</a><span class="n">Ribosomal protein L16p/L10e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001197" class="t">IPR001197</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016180" class="t">IPR016180</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018255" class="t">IPR018255</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:189:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:190:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12161">12161</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12161&pViewType=protein">12289</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:594527-597024">scaffold_2:594527-597024 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_929_#_TRINITY_DN411_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:190:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:190:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020556" class="t">IPR020556</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:190:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:191:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12166">12166</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12166&pViewType=protein">12294</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:604555-602207">scaffold_2:602207-604555 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_951_#_TRINITY_DN2598_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:191:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:191:j_id58"><div class="term"><span class="t">KOG2154</span><span class="n">Predicted nucleolar protein involved in ribosome biogenesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03914" class="t">PF03914</a><span class="n">CBF/Mak21 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005612" class="t">IPR005612</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:191:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:192:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12169">12169</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12169&pViewType=protein">12297</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:607642-610902">scaffold_2:607642-610902 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_957_#_TRINITY_DN30_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:192:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000176" class="t">GO:0000176</a> |
| <span class="n">nuclear exosome (RNase complex)</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006139" class="t">GO:0006139</a> |
| <span class="n">nucleobase-containing compound metabolic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006396" class="t">GO:0006396</a> |
| <span class="n">RNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008408" class="t">GO:0008408</a> |
| <span class="n">3'-5' exonuclease activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0044237" class="t">GO:0044237</a> |
| <span class="n">cellular metabolic process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:192:j_id58"><div class="term"><span class="t">KOG2206</span><span class="n">Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.13.-" class="t">EC:3.1.13.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01612" class="t">PF01612</a><span class="n">3'-5' exonuclease</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08066" class="t">PF08066</a><span class="n">PMC2NT (NUC016) domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002562" class="t">IPR002562</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010997" class="t">IPR010997</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012337" class="t">IPR012337</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012588" class="t">IPR012588</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:192:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:193:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12193">12193</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12193&pViewType=protein">12321</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:672513-671427">scaffold_2:671427-672513 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1127_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:193:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:193:j_id58"><div class="term"><span class="t">KOG0815</span><span class="n">60S acidic ribosomal protein P0</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00428" class="t">PF00428</a><span class="n">60s Acidic ribosomal protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00466" class="t">PF00466</a><span class="n">Ribosomal protein L10</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR030670" class="t">IPR030670</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001790" class="t">IPR001790</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:193:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:194:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12236">12236</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12236&pViewType=protein">12364</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:783806-787250">scaffold_2:783806-787250 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1185_#_TRINITY_DN2268_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:194:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:194:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.-" class="t">EC:2.7.11.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000961" class="t">IPR000961</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000008" class="t">IPR000008</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:194:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:195:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12274">12274</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12274&pViewType=protein">12402</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:868888-865639">scaffold_2:865639-868888 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1328_#_TRINITY_DN2163_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:195:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0002098" class="t">GO:0002098</a> |
| <span class="n">tRNA wobble uridine modification</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0050660" class="t">GO:0050660</a> |
| <span class="n">flavin adenine dinucleotide binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:195:j_id58"><div class="term"><span class="t">KOG2311</span><span class="n">NAD/FAD-utilizing protein possibly involved in translation</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01134" class="t">PF01134</a><span class="n">Glucose inhibited division protein A</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13932" class="t">PF13932</a><span class="n">tRNA modifying enzyme MnmG/GidA C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR026904" class="t">IPR026904</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004416" class="t">IPR004416</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002218" class="t">IPR002218</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020595" class="t">IPR020595</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:195:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:196:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12288">12288</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12288&pViewType=protein">12416</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:909052-899306">scaffold_2:899306-909052 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1363_#_TRINITY_DN3119_c3_g1_i6_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:196:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000160" class="t">GO:0000160</a> |
| <span class="n">phosphorelay signal transduction system</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004871" class="t">GO:0004871</a> |
| <span class="n">obsolete signal transducer activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0007165" class="t">GO:0007165</a> |
| <span class="n">signal transduction</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:196:j_id58"><div class="term"><span class="t">KOG0605</span><span class="n">NDR and related serine/threonine kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00072" class="t">PF00072</a><span class="n">Response regulator receiver domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000014" class="t">IPR000014</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000961" class="t">IPR000961</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011006" class="t">IPR011006</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001789" class="t">IPR001789</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:196:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:197:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12308">12308</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12308&pViewType=protein">12436</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:952127-952975">scaffold_2:952127-952975 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1444_#_TRINITY_DN996_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:197:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:197:j_id58"><div class="term"><span class="t">KOG3162</span><span class="n">Mitochondrial/chloroplast ribosomal protein S18</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01084" class="t">PF01084</a><span class="n">Ribosomal protein S18</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001648" class="t">IPR001648</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:197:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:198:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12319">12319</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12319&pViewType=protein">12447</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:980361-981716">scaffold_2:980361-981716 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_2_t20102_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:198:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:198:j_id58"><div class="term"><span class="t">KOG0832</span><span class="n">Mitochondrial/chloroplast ribosomal protein S2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00318" class="t">PF00318</a><span class="n">Ribosomal protein S2</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023591" class="t">IPR023591</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001865" class="t">IPR001865</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005706" class="t">IPR005706</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:198:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:199:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12323">12323</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12323&pViewType=protein">12451</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:988130-991639">scaffold_2:988130-991639 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pm.C_20211_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:199:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003746" class="t">GO:0003746</a> |
| <span class="n">translation elongation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006414" class="t">GO:0006414</a> |
| <span class="n">translational elongation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:199:j_id58"><div class="term"><span class="t">KOG0465</span><span class="n">Mitochondrial elongation factor</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.5.-" class="t">EC:3.6.5.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00679" class="t">PF00679</a><span class="n">Elongation factor G C-terminus</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14492" class="t">PF14492</a><span class="n">Elongation Factor G, domain III</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03764" class="t">PF03764</a><span class="n">Elongation factor G, domain IV</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000640" class="t">IPR000640</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005517" class="t">IPR005517</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009022" class="t">IPR009022</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004540" class="t">IPR004540</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:199:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:200:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12339">12339</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12339&pViewType=protein">12467</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1027853-1028767">scaffold_2:1027853-1028767 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1270_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:200:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:200:j_id58"><div class="term"><span class="t">KOG3311</span><span class="n">Ribosomal protein S18</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00416" class="t">PF00416</a><span class="n">Ribosomal protein S13/S18</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010979" class="t">IPR010979</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001892" class="t">IPR001892</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:200:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:201:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12358">12358</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12358&pViewType=protein">12486</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1087550-1089563">scaffold_2:1087550-1089563 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1588_#_TRINITY_DN1642_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:201:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:201:j_id58"><div class="term"><span class="t">KOG2648</span><span class="n">Diphthamide biosynthesis protein</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.5.1.108" class="t">EC:2.5.1.108</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01866" class="t">PF01866</a><span class="n">Putative diphthamide synthesis protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016435" class="t">IPR016435</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:201:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:202:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12370">12370</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12370&pViewType=protein">12498</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1123639-1122380">scaffold_2:1122380-1123639 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1623_#_TRINITY_DN158_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:202:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:202:j_id58"><div class="term"><span class="t">KOG4089</span><span class="n">Predicted mitochondrial ribosomal protein L23</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00276" class="t">PF00276</a><span class="n">Ribosomal protein L23</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012678" class="t">IPR012678</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013025" class="t">IPR013025</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:202:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:203:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12418">12418</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12418&pViewType=protein">12546</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1239403-1240955">scaffold_2:1239403-1240955 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1803_#_TRINITY_DN1968_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:203:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:203:j_id58"><div class="term"><span class="t">KOG1696</span><span class="n">60s ribosomal protein L19</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01280" class="t">PF01280</a><span class="n">Ribosomal protein L19e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000196" class="t">IPR000196</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:203:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:204:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12438">12438</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12438&pViewType=protein">12566</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1284754-1283424">scaffold_2:1283424-1284754 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1878_#_TRINITY_DN1800_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:204:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:204:j_id58"><div class="term"><span class="t">KOG1678</span><span class="n">60s ribosomal protein L15</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00827" class="t">PF00827</a><span class="n">Ribosomal L15</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012678" class="t">IPR012678</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000439" class="t">IPR000439</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020925" class="t">IPR020925</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:204:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:205:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12470">12470</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12470&pViewType=protein">12598</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1362746-1364996">scaffold_2:1362746-1364996 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_1968_#_TRINITY_DN539_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:205:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000049" class="t">GO:0000049</a> |
| <span class="n">tRNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004826" class="t">GO:0004826</a> |
| <span class="n">phenylalanine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006432" class="t">GO:0006432</a> |
| <span class="n">phenylalanyl-tRNA aminoacylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043039" class="t">GO:0043039</a> |
| <span class="n">tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:205:j_id58"><div class="term"><span class="t">KOG2784</span><span class="n">Phenylalanyl-tRNA synthetase, beta subunit</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.20" class="t">EC:6.1.1.20</a><span class="n">phenylalanine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01409" class="t">PF01409</a><span class="n">tRNA synthetases class II core domain (F)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004529" class="t">IPR004529</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002319" class="t">IPR002319</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:205:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:206:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12481">12481</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12481&pViewType=protein">12609</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1380345-1381922">scaffold_2:1380345-1381922 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2000_#_TRINITY_DN1664_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:206:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:206:j_id58"><div class="term"><span class="t">KOG3320</span><span class="n">40S ribosomal protein S7</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01251" class="t">PF01251</a><span class="n">Ribosomal protein S7e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000554" class="t">IPR000554</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:206:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:207:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12496">12496</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12496&pViewType=protein">12624</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1417579-1416382">scaffold_2:1416382-1417579 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2056_#_TRINITY_DN3071_c2_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:207:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:207:j_id58"><div class="term"><span class="t">KOG1624</span><span class="n">Mitochondrial/chloroplast ribosomal protein L4</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00573" class="t">PF00573</a><span class="n">Ribosomal protein L4/L1 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002136" class="t">IPR002136</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013005" class="t">IPR013005</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023574" class="t">IPR023574</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:207:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:208:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12507">12507</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12507&pViewType=protein">12635</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1450902-1448647">scaffold_2:1448647-1450902 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE418775_14268_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:208:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:208:j_id58"><div class="term"><span class="t">KOG2780</span><span class="n">Ribosome biogenesis protein RPF1, contains IMP4 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04427" class="t">PF04427</a><span class="n">Brix domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007109" class="t">IPR007109</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004154" class="t">IPR004154</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:208:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:209:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12520">12520</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12520&pViewType=protein">12648</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1478142-1480877">scaffold_2:1478142-1480877 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2134_#_TRINITY_DN3701_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:209:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:209:j_id58"><div class="term"><span class="t">KOG2315</span><span class="n">Predicted translation initiation factor related to eIF-3a</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08662" class="t">PF08662</a><span class="n">Eukaryotic translation initiation factor eIF2A</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013979" class="t">IPR013979</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007110" class="t">IPR007110</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011387" class="t">IPR011387</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:209:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:210:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12522">12522</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12522&pViewType=protein">12650</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1482956-1484034">scaffold_2:1482956-1484034 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.2_#_241_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:210:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005763" class="t">GO:0005763</a> |
| <span class="n">mitochondrial small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:210:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13741" class="t">PF13741</a><span class="n">Mitochondrial ribosomal protein S25</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016939" class="t">IPR016939</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:210:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:211:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12524">12524</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12524&pViewType=protein">12652</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1494570-1486221">scaffold_2:1486221-1494570 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_2_t20068_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:211:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:211:j_id58"><div class="term"><span class="t">KOG1242</span><span class="n">Protein containing adaptin N-terminal region</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12074" class="t">PF12074</a><span class="n">Generalcontrol nonderepressible 1 (Gcn1) N-terminal</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12765" class="t">PF12765</a><span class="n">HEAT repeat associated with sister chromatid cohesion</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13646" class="t">PF13646</a><span class="n">HEAT repeats</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022716" class="t">IPR022716</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021133" class="t">IPR021133</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR026003" class="t">IPR026003</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:211:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:212:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12525">12525</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12525&pViewType=protein">12653</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1494663-1496087">scaffold_2:1494663-1496087 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.2_#_277_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:212:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:212:j_id58"><div class="term"><span class="t">KOG2823</span><span class="n">Cellular protein (glioma tumor suppressor candidate region gene 2)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07767" class="t">PF07767</a><span class="n">Nop53 (60S ribosomal biogenesis)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011687" class="t">IPR011687</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:212:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:213:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12540">12540</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12540&pViewType=protein">12668</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1531780-1530001">scaffold_2:1530001-1531780 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">MIX14728_8527_67_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:213:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:213:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:213:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:214:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12548">12548</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12548&pViewType=protein">12676</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1550884-1548392">scaffold_2:1548392-1550884 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.2.1088.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:214:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:214:j_id58"><div class="term"><span class="t">KOG0401</span><span class="n">Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02854" class="t">PF02854</a><span class="n">MIF4G domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003891" class="t">IPR003891</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003890" class="t">IPR003890</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:214:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:215:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12553">12553</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12553&pViewType=protein">12681</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1561909-1564083">scaffold_2:1561909-1564083 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE422269_41650_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:215:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:215:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020556" class="t">IPR020556</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:215:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:216:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12569">12569</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12569&pViewType=protein">12697</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1596132-1596821">scaffold_2:1596132-1596821 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2285_#_TRINITY_DN2666_c0_g4_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:216:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:216:j_id58"><div class="term"><span class="t">KOG3505</span><span class="n">Mitochondrial/chloroplast ribosomal protein L33-like</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00471" class="t">PF00471</a><span class="n">Ribosomal protein L33</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011332" class="t">IPR011332</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001705" class="t">IPR001705</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:216:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:217:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12573">12573</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12573&pViewType=protein">12701</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1611346-1608826">scaffold_2:1608826-1611346 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2299_#_TRINITY_DN3703_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:217:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003677" class="t">GO:0003677</a> |
| <span class="n">DNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006355" class="t">GO:0006355</a> |
| <span class="n">regulation of DNA-templated transcription</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:217:j_id58"><div class="term"><span class="t">KOG3070</span><span class="n">Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00313" class="t">PF00313</a><span class="n">'Cold-shock' DNA-binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011129" class="t">IPR011129</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002059" class="t">IPR002059</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:217:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:218:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12600">12600</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12600&pViewType=protein">12728</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1673939-1677855">scaffold_2:1673939-1677855 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1506_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:218:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:218:j_id58"><div class="term"><span class="t">KOG2038</span><span class="n">CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03914" class="t">PF03914</a><span class="n">CBF/Mak21 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005612" class="t">IPR005612</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:218:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:219:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12610">12610</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12610&pViewType=protein">12738</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1696843-1698431">scaffold_2:1696843-1698431 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2482_#_TRINITY_DN1792_c1_g1_i6_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:219:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:219:j_id58"><div class="term"><span class="t">KOG3181</span><span class="n">40S ribosomal protein S3</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00189" class="t">PF00189</a><span class="n">Ribosomal protein S3, C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07650" class="t">PF07650</a><span class="n">KH domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001351" class="t">IPR001351</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018280" class="t">IPR018280</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009019" class="t">IPR009019</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005703" class="t">IPR005703</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004044" class="t">IPR004044</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:219:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:220:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12619">12619</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12619&pViewType=protein">12747</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1714507-1715803">scaffold_2:1714507-1715803 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2524_#_TRINITY_DN1520_c0_g1_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:220:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016788" class="t">GO:0016788</a> |
| <span class="n">hydrolase activity, acting on ester bonds</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019478" class="t">GO:0019478</a> |
| <span class="n">D-amino acid catabolic process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:220:j_id58"><div class="term"><span class="t">KOG3323</span><span class="n">D-Tyr-tRNA (Tyr) deacylase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.-.-" class="t">EC:3.1.-.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02580" class="t">PF02580</a><span class="n">D-Tyr-tRNA(Tyr) deacylase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023509" class="t">IPR023509</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003732" class="t">IPR003732</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:220:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:221:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12636">12636</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12636&pViewType=protein">12764</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1753845-1752755">scaffold_2:1752755-1753845 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2585_#_TRINITY_DN3037_c0_g2_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:221:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:221:j_id58"><div class="term"><span class="t">KOG0402</span><span class="n">60S ribosomal protein L37</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01780" class="t">PF01780</a><span class="n">Ribosomal L37ae protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002674" class="t">IPR002674</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011332" class="t">IPR011332</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:221:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:222:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12640">12640</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12640&pViewType=protein">12768</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1765095-1767444">scaffold_2:1765095-1767444 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2601_#_TRINITY_DN2589_c0_g2_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:222:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:222:j_id58"><div class="term"><span class="t">KOG1211</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:222:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:223:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12662">12662</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12662&pViewType=protein">12790</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1824282-1823096">scaffold_2:1823096-1824282 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2674_#_TRINITY_DN3416_c2_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:223:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009103" class="t">GO:0009103</a> |
| <span class="n">lipopolysaccharide biosynthetic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016020" class="t">GO:0016020</a> |
| <span class="n">membrane</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016773" class="t">GO:0016773</a> |
| <span class="n">phosphotransferase activity, alcohol group as acceptor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:223:j_id58"><div class="term"><span class="t">KOG3087</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06293" class="t">PF06293</a><span class="n">Lipopolysaccharide kinase (Kdo/WaaP) family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010440" class="t">IPR010440</a><span class="n">missing_ipr010440</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008266" class="t">IPR008266</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022495" class="t">IPR022495</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:223:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:224:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12692">12692</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12692&pViewType=protein">12820</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1911534-1909820">scaffold_2:1909820-1911534 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_2_t20226_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:224:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003677" class="t">GO:0003677</a> |
| <span class="n">DNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006355" class="t">GO:0006355</a> |
| <span class="n">regulation of DNA-templated transcription</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:224:j_id58"><div class="term"><span class="t">KOG3070</span><span class="n">Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00313" class="t">PF00313</a><span class="n">'Cold-shock' DNA-binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011129" class="t">IPR011129</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002059" class="t">IPR002059</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:224:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:225:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12693">12693</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12693&pViewType=protein">12821</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1914687-1912049">scaffold_2:1912049-1914687 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2753_#_TRINITY_DN3870_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:225:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003746" class="t">GO:0003746</a> |
| <span class="n">translation elongation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006414" class="t">GO:0006414</a> |
| <span class="n">translational elongation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:225:j_id58"><div class="term"><span class="t">KOG0052</span><span class="n">Translation elongation factor EF-1 alpha/Tu</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03143" class="t">PF03143</a><span class="n">Elongation factor Tu C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004160" class="t">IPR004160</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004539" class="t">IPR004539</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009001" class="t">IPR009001</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:225:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:226:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12695">12695</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12695&pViewType=protein">12823</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1916431-1918731">scaffold_2:1916431-1918731 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_2_t30115_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:226:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003677" class="t">GO:0003677</a> |
| <span class="n">DNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006355" class="t">GO:0006355</a> |
| <span class="n">regulation of DNA-templated transcription</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:226:j_id58"><div class="term"><span class="t">KOG3070</span><span class="n">Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00313" class="t">PF00313</a><span class="n">'Cold-shock' DNA-binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011129" class="t">IPR011129</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002059" class="t">IPR002059</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:226:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:227:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12700">12700</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12700&pViewType=protein">12828</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1930179-1929363">scaffold_2:1929363-1930179 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1600_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:227:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:227:j_id58"><div class="term"><span class="t">KOG0878</span><span class="n">60S ribosomal protein L32</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01655" class="t">PF01655</a><span class="n">Ribosomal protein L32</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001515" class="t">IPR001515</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:227:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:228:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12714">12714</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12714&pViewType=protein">12842</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1962834-1965739">scaffold_2:1962834-1965739 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_2_t30118_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:228:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003677" class="t">GO:0003677</a> |
| <span class="n">DNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006355" class="t">GO:0006355</a> |
| <span class="n">regulation of DNA-templated transcription</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:228:j_id58"><div class="term"><span class="t">KOG3070</span><span class="n">Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00313" class="t">PF00313</a><span class="n">'Cold-shock' DNA-binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011129" class="t">IPR011129</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002059" class="t">IPR002059</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:228:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:229:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12717">12717</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12717&pViewType=protein">12845</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_2:1969948-1971499">scaffold_2:1969948-1971499 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.2_#_2825_#_TRINITY_DN1350_c0_g1_i6_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:229:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:229:j_id58"><div class="term"><span class="t">KOG3295</span><span class="n">60S Ribosomal protein L13</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01294" class="t">PF01294</a><span class="n">Ribosomal protein L13e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001380" class="t">IPR001380</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:229:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:230:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12735">12735</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12735&pViewType=protein">12863</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:26572-24515">scaffold_3:24515-26572 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pm.C_30005_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:230:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:230:j_id58"><div class="term"><span class="t">KOG2345</span><span class="n">Serine/threonine protein kinase/TGF-beta stimulated factor</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:230:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:231:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12779">12779</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12779&pViewType=protein">12907</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:117486-120400">scaffold_3:117486-120400 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_168_#_TRINITY_DN1085_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:231:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:231:j_id58"><div class="term"><span class="t">KOG2188</span><span class="n">Predicted RNA-binding protein, contains Pumilio domains</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001313" class="t">IPR001313</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:231:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:232:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12841">12841</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12841&pViewType=protein">12969</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:265209-268932">scaffold_3:265209-268932 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_435_#_TRINITY_DN3459_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:232:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:232:j_id58"><div class="term"><span class="t">KOG2102</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00773" class="t">PF00773</a><span class="n">RNB domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:232:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:233:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12842">12842</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12842&pViewType=protein">12970</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:271231-268952">scaffold_3:268952-271231 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">MIX16297_14923_28_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:233:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:233:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020556" class="t">IPR020556</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:233:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:234:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12880">12880</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12880&pViewType=protein">13008</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:353194-354896">scaffold_3:353194-354896 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1749_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:234:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:234:j_id58"><div class="term"><span class="t">KOG1152</span><span class="n">Signal transduction serine/threonine kinase with PAS/PAC sensor domain</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:234:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:235:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12882">12882</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12882&pViewType=protein">13010</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:360585-357907">scaffold_3:357907-360585 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_562_#_TRINITY_DN3335_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:235:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:235:j_id58"><div class="term"><span class="t">KOG1462</span><span class="n">Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011004" class="t">IPR011004</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029044" class="t">IPR029044</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:235:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:236:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12922">12922</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12922&pViewType=protein">13050</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:447758-451562">scaffold_3:447758-451562 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.813.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:236:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:236:j_id58"><div class="term"><span class="t">KOG2102</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.13.-" class="t">EC:3.1.13.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00773" class="t">PF00773</a><span class="n">RNB domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022966" class="t">IPR022966</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002716" class="t">IPR002716</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:236:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:237:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12962">12962</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12962&pViewType=protein">13090</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:549291-548328">scaffold_3:548328-549291 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.892.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:237:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008276" class="t">GO:0008276</a> |
| <span class="n">protein methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0032259" class="t">GO:0032259</a> |
| <span class="n">methylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:237:j_id58"><div class="term"><span class="t">KOG3191</span><span class="n">Predicted N6-DNA-methyltransferase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.297" class="t">EC:2.1.1.297</a><span class="n">peptide chain release factor N5-glutamine methyltransferase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13659" class="t">PF13659</a><span class="n">obsolete_pf13659</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004557" class="t">IPR004557</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002052" class="t">IPR002052</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:237:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:238:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=12995">12995</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=12995&pViewType=protein">13123</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:632547-638881">scaffold_3:632547-638881 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_3_t10240_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:238:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006446" class="t">GO:0006446</a> |
| <span class="n">regulation of translational initiation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042803" class="t">GO:0042803</a> |
| <span class="n">protein homodimerization activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:238:j_id58"><div class="term"><span class="t">KOG1035</span><span class="n">eIF-2alpha kinase GCN2</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05773" class="t">PF05773</a><span class="n">RWD domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12745" class="t">PF12745</a><span class="n">Anticodon binding domain of tRNAs</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016135" class="t">IPR016135</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024435" class="t">IPR024435</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006575" class="t">IPR006575</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016255" class="t">IPR016255</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004154" class="t">IPR004154</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:238:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:239:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13018">13018</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13018&pViewType=protein">13146</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:694835-695671">scaffold_3:694835-695671 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1117_#_TRINITY_DN752_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:239:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:239:j_id58"><div class="term"><span class="t">KOG4122</span><span class="n">Mitochondrial/chloroplast ribosomal protein L36</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00444" class="t">PF00444</a><span class="n">Ribosomal protein L36</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000473" class="t">IPR000473</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:239:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:240:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13034">13034</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13034&pViewType=protein">13162</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:732811-733473">scaffold_3:732811-733473 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1896_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:240:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003747" class="t">GO:0003747</a> |
| <span class="n">translation release factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006415" class="t">GO:0006415</a> |
| <span class="n">translational termination</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:240:j_id58"><div class="term"><span class="t">KOG3429</span><span class="n">Predicted peptidyl-tRNA hydrolase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.1.29" class="t">EC:3.1.1.29</a><span class="n">aminoacyl-tRNA hydrolase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00472" class="t">PF00472</a><span class="n">RF-1 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000352" class="t">IPR000352</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:240:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:241:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13067">13067</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13067&pViewType=protein">13195</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:802584-801271">scaffold_3:801271-802584 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.1925_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:241:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:241:j_id58"><div class="term"><span class="t">KOG3154</span><span class="n">Uncharacterized conserved protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04068" class="t">PF04068</a><span class="n">Possible Fer4-like domain in RNase L inhibitor, RLI</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04034" class="t">PF04034</a><span class="n">Ribosome biogenesis protein, C-terminal</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007209" class="t">IPR007209</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007177" class="t">IPR007177</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:241:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:242:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13137">13137</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13137&pViewType=protein">13265</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:971504-969625">scaffold_3:969625-971504 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.3_#_191_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:242:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004831" class="t">GO:0004831</a> |
| <span class="n">tyrosine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006437" class="t">GO:0006437</a> |
| <span class="n">tyrosyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:242:j_id58"><div class="term"><span class="t">KOG2623</span><span class="n">Tyrosyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.1" class="t">EC:6.1.1.1</a><span class="n">tyrosine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00579" class="t">PF00579</a><span class="n">tRNA synthetases class I (W and Y)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002305" class="t">IPR002305</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002307" class="t">IPR002307</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:242:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:243:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13140">13140</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13140&pViewType=protein">13268</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:981109-984145">scaffold_3:981109-984145 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1552_#_TRINITY_DN1060_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:243:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004825" class="t">GO:0004825</a> |
| <span class="n">methionine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006431" class="t">GO:0006431</a> |
| <span class="n">methionyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:243:j_id58"><div class="term"><span class="t">KOG1247</span><span class="n">Methionyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.10" class="t">EC:6.1.1.10</a><span class="n">methionine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00458" class="t">PF00458</a><span class="n">WHEP-TRS domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09334" class="t">PF09334</a><span class="n">tRNA synthetases class I (M)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029038" class="t">IPR029038</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015413" class="t">IPR015413</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014758" class="t">IPR014758</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000738" class="t">IPR000738</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009068" class="t">IPR009068</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:243:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:244:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13142">13142</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13142&pViewType=protein">13270</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:987238-988994">scaffold_3:987238-988994 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1557_#_TRINITY_DN1958_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:244:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:244:j_id58"><div class="term"><span class="t">KOG0830</span><span class="n">40S ribosomal protein SA (P40)/Laminin receptor 1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00318" class="t">PF00318</a><span class="n">Ribosomal protein S2</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023591" class="t">IPR023591</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001865" class="t">IPR001865</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018130" class="t">IPR018130</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005707" class="t">IPR005707</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:244:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:245:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13165">13165</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13165&pViewType=protein">13293</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1033964-1032364">scaffold_3:1032364-1033964 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1613_#_TRINITY_DN1831_c0_g3_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:245:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:245:j_id58"><div class="term"><span class="t">KOG3418</span><span class="n">60S ribosomal protein L27</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01777" class="t">PF01777</a><span class="n">Ribosomal L27e protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018262" class="t">IPR018262</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001141" class="t">IPR001141</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:245:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:246:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13202">13202</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13202&pViewType=protein">13330</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1113278-1112010">scaffold_3:1112010-1113278 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.60.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:246:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:246:j_id58"><div class="term"><span class="t">KOG1697</span><span class="n">Mitochondrial/chloroplast ribosomal protein S9</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00380" class="t">PF00380</a><span class="n">Ribosomal protein S9/S16</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000754" class="t">IPR000754</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:246:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:247:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13205">13205</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13205&pViewType=protein">13333</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1118944-1117743">scaffold_3:1117743-1118944 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.1197.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:247:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009966" class="t">GO:0009966</a> |
| <span class="n">regulation of signal transduction</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:247:j_id58"><div class="term"><span class="t">KOG1826</span><span class="n">Ras GTPase activating protein RasGAP/neurofibromin</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016253" class="t">IPR016253</a><span class="n">missing_ipr016253</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=1.A.26.1.1&acc=Q45121" class="t">1.A.26.1.1</a><span class="n">Mg2+, Co2+ transporter, MgtE (Smith et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:247:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:248:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13211">13211</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13211&pViewType=protein">13339</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1126440-1128175">scaffold_3:1126440-1128175 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1765_#_TRINITY_DN2727_c2_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:248:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:248:j_id58"><div class="term"><span class="t">KOG3163</span><span class="n">Uncharacterized conserved protein related to ribosomal protein S8E</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01201" class="t">PF01201</a><span class="n">Ribosomal protein S8e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022309" class="t">IPR022309</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:248:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:249:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13223">13223</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13223&pViewType=protein">13351</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1157872-1156764">scaffold_3:1156764-1157872 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1798_#_TRINITY_DN3183_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:249:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:249:j_id58"><div class="term"><span class="t">KOG1754</span><span class="n">40S ribosomal protein S15/S22</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00410" class="t">PF00410</a><span class="n">Ribosomal protein S8</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000630" class="t">IPR000630</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:249:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:250:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13224">13224</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13224&pViewType=protein">13352</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1158091-1158882">scaffold_3:1158091-1158882 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.3_#_228_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:250:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:250:j_id58"><div class="term"><span class="t">KOG0187</span><span class="n">40S ribosomal protein S17</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00833" class="t">PF00833</a><span class="n">Ribosomal S17</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001210" class="t">IPR001210</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018273" class="t">IPR018273</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:250:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:251:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13232">13232</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13232&pViewType=protein">13360</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1172583-1170411">scaffold_3:1170411-1172583 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1841_#_TRINITY_DN3227_c2_g4_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:251:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:251:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.17" class="t">EC:2.7.11.17</a><span class="n">Ca2+/calmodulin-dependent protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=1.A.26.1.1&acc=Q45121" class="t">1.A.26.1.1</a><span class="n">Mg2+, Co2+ transporter, MgtE (Smith et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:251:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:252:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13249">13249</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13249&pViewType=protein">13377</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1215264-1212662">scaffold_3:1212662-1215264 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.2096_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:252:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000287" class="t">GO:0000287</a> |
| <span class="n">magnesium ion binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004826" class="t">GO:0004826</a> |
| <span class="n">phenylalanine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006432" class="t">GO:0006432</a> |
| <span class="n">phenylalanyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:252:j_id58"><div class="term"><span class="t">KOG2472</span><span class="n">Phenylalanyl-tRNA synthetase beta subunit</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.20" class="t">EC:6.1.1.20</a><span class="n">phenylalanine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03483" class="t">PF03483</a><span class="n">B3/4 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03484" class="t">PF03484</a><span class="n">tRNA synthetase B5 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009061" class="t">IPR009061</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005146" class="t">IPR005146</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005147" class="t">IPR005147</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004531" class="t">IPR004531</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020825" class="t">IPR020825</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:252:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:253:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13278">13278</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13278&pViewType=protein">13406</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1288444-1284671">scaffold_3:1284671-1288444 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_1976_#_TRINITY_DN3117_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:253:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006364" class="t">GO:0006364</a> |
| <span class="n">rRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0032040" class="t">GO:0032040</a> |
| <span class="n">small-subunit processome</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:253:j_id58"><div class="term"><span class="t">KOG0319</span><span class="n">WD40-repeat-containing subunit of the 18S rRNA processing complex</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00400" class="t">PF00400</a><span class="n">WD domain, G-beta repeat</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08625" class="t">PF08625</a><span class="n">Utp13 specific WD40 associated domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017986" class="t">IPR017986</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013934" class="t">IPR013934</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011044" class="t">IPR011044</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019775" class="t">IPR019775</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001680" class="t">IPR001680</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020472" class="t">IPR020472</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:253:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:254:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13318">13318</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13318&pViewType=protein">13446</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1386095-1384893">scaffold_3:1384893-1386095 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE496712_19053_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:254:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019843" class="t">GO:0019843</a> |
| <span class="n">rRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:254:j_id58"><div class="term"><span class="t">KOG3422</span><span class="n">Mitochondrial ribosomal protein L16</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00252" class="t">PF00252</a><span class="n">Ribosomal protein L16p/L10e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016180" class="t">IPR016180</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000114" class="t">IPR000114</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020798" class="t">IPR020798</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:254:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:255:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13326">13326</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13326&pViewType=protein">13454</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1402443-1406104">scaffold_3:1402443-1406104 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_3_t20326_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:255:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:255:j_id58"><div class="term"><span class="t">KOG1145</span><span class="n">Mitochondrial translation initiation factor 2 (IF-2; GTPase)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf11987" class="t">PF11987</a><span class="n">Translation-initiation factor 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023115" class="t">IPR023115</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:255:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:256:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13327">13327</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13327&pViewType=protein">13455</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1410526-1406105">scaffold_3:1406105-1410526 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.3_#_2170_#_TRINITY_DN3425_c5_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:256:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:256:j_id58"><div class="term"><span class="t">KOG0595</span><span class="n">Serine/threonine-protein kinase involved in autophagy</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12063" class="t">PF12063</a><span class="n">Domain of unknown function (DUF3543)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022708" class="t">IPR022708</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:256:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:257:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13335">13335</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13335&pViewType=protein">13463</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1427740-1431350">scaffold_3:1427740-1431350 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.173.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:257:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:257:j_id58"><div class="term"><span class="t">KOG1041</span><span class="n">Translation initiation factor 2C (eIF-2C) and related proteins</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08699" class="t">PF08699</a><span class="n">Argonaute linker 1 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02171" class="t">PF02171</a><span class="n">Piwi domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02170" class="t">PF02170</a><span class="n">PAZ domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003100" class="t">IPR003100</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014811" class="t">IPR014811</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012337" class="t">IPR012337</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003165" class="t">IPR003165</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:257:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:258:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13354">13354</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13354&pViewType=protein">13482</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1482308-1478894">scaffold_3:1478894-1482308 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.304.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:258:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:258:j_id58"><div class="term"><span class="t">KOG1488</span><span class="n">Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00806" class="t">PF00806</a><span class="n">Pumilio-family RNA binding repeat</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001313" class="t">IPR001313</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:258:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:259:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13370">13370</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13370&pViewType=protein">13498</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1513605-1514626">scaffold_3:1513605-1514626 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.258.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:259:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:259:j_id58"><div class="term"><span class="t">KOG0877</span><span class="n">40S ribosomal protein S2/30S ribosomal protein S5</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03719" class="t">PF03719</a><span class="n">Ribosomal protein S5, C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00333" class="t">PF00333</a><span class="n">Ribosomal protein S5, N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005324" class="t">IPR005324</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018192" class="t">IPR018192</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005711" class="t">IPR005711</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013810" class="t">IPR013810</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:259:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:260:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13380">13380</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13380&pViewType=protein">13508</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1542746-1545688">scaffold_3:1542746-1545688 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.1050.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:260:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004819" class="t">GO:0004819</a> |
| <span class="n">glutamine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006425" class="t">GO:0006425</a> |
| <span class="n">glutaminyl-tRNA aminoacylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043039" class="t">GO:0043039</a> |
| <span class="n">tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:260:j_id58"><div class="term"><span class="t">KOG1148</span><span class="n">Glutaminyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.18" class="t">EC:6.1.1.18</a><span class="n">glutamine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03950" class="t">PF03950</a><span class="n">tRNA synthetases class I (E and Q), anti-codon binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00749" class="t">PF00749</a><span class="n">tRNA synthetases class I (E and Q), catalytic domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04558" class="t">PF04558</a><span class="n">Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007639" class="t">IPR007639</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004514" class="t">IPR004514</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020059" class="t">IPR020059</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011035" class="t">IPR011035</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020058" class="t">IPR020058</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000924" class="t">IPR000924</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:260:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:261:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13385">13385</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13385&pViewType=protein">13513</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1557007-1558590">scaffold_3:1557007-1558590 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gw1.3.551.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:261:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0044237" class="t">GO:0044237</a> |
| <span class="n">cellular metabolic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0044249" class="t">GO:0044249</a> |
| <span class="n">cellular biosynthetic process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:261:j_id58"><div class="term"><span class="t">KOG1468</span><span class="n">Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:5.3.1.23" class="t">EC:5.3.1.23</a><span class="n">S-methyl-5-thioribose-1-phosphate isomerase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01008" class="t">PF01008</a><span class="n">Initiation factor 2 subunit family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011559" class="t">IPR011559</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005251" class="t">IPR005251</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000649" class="t">IPR000649</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:261:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:262:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13391">13391</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13391&pViewType=protein">13519</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1575418-1572757">scaffold_3:1572757-1575418 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_3_t20119_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:262:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0017183" class="t">GO:0017183</a> |
| <span class="n">peptidyl-diphthamide biosynthetic process from peptidyl-histidine</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:262:j_id58"><div class="term"><span class="t">KOG2648</span><span class="n">Diphthamide biosynthesis protein</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.5.1.108" class="t">EC:2.5.1.108</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01866" class="t">PF01866</a><span class="n">Putative diphthamide synthesis protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016435" class="t">IPR016435</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010014" class="t">IPR010014</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:262:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:263:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13398">13398</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13398&pViewType=protein">13526</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1592734-1594516">scaffold_3:1592734-1594516 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.3.951.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:263:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000049" class="t">GO:0000049</a> |
| <span class="n">tRNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000287" class="t">GO:0000287</a> |
| <span class="n">magnesium ion binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004826" class="t">GO:0004826</a> |
| <span class="n">phenylalanine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006432" class="t">GO:0006432</a> |
| <span class="n">phenylalanyl-tRNA aminoacylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043039" class="t">GO:0043039</a> |
| <span class="n">tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:263:j_id58"><div class="term"><span class="t">KOG2783</span><span class="n">Phenylalanyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.20" class="t">EC:6.1.1.20</a><span class="n">phenylalanine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03147" class="t">PF03147</a><span class="n">Ferredoxin-fold anticodon binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01409" class="t">PF01409</a><span class="n">tRNA synthetases class II core domain (F)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004530" class="t">IPR004530</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002319" class="t">IPR002319</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005121" class="t">IPR005121</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:263:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:264:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13425">13425</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13425&pViewType=protein">13553</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1647426-1650006">scaffold_3:1647426-1650006 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.3_#_275_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:264:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005852" class="t">GO:0005852</a> |
| <span class="n">eukaryotic translation initiation factor 3 complex</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0031369" class="t">GO:0031369</a> |
| <span class="n">translation initiation factor binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:264:j_id58"><div class="term"><span class="t">KOG1076</span><span class="n">Translation initiation factor 3, subunit c (eIF-3c)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.4.22.68" class="t">EC:3.4.22.68</a><span class="n">Ulp1 peptidase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01399" class="t">PF01399</a><span class="n">PCI domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05470" class="t">PF05470</a><span class="n">Eukaryotic translation initiation factor 3 subunit 8 N-terminus</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008905" class="t">IPR008905</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000717" class="t">IPR000717</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:264:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:265:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13437">13437</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13437&pViewType=protein">13565</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1676038-1676601">scaffold_3:1676038-1676601 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.2277_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:265:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:265:j_id58"><div class="term"><span class="t">KOG2317</span><span class="n">Putative translation initiation inhibitor UK114/IBM1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01042" class="t">PF01042</a><span class="n">Endoribonuclease L-PSP</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013813" class="t">IPR013813</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006175" class="t">IPR006175</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:265:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:266:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13446">13446</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13446&pViewType=protein">13574</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1694035-1697967">scaffold_3:1694035-1697967 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pg.3_#_284_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:266:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0002161" class="t">GO:0002161</a> |
| <span class="n">aminoacyl-tRNA editing activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004822" class="t">GO:0004822</a> |
| <span class="n">isoleucine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006428" class="t">GO:0006428</a> |
| <span class="n">isoleucyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:266:j_id58"><div class="term"><span class="t">KOG0434</span><span class="n">Isoleucyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.5" class="t">EC:6.1.1.5</a><span class="n">isoleucine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00133" class="t">PF00133</a><span class="n">tRNA synthetases class I (I, L, M and V)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08264" class="t">PF08264</a><span class="n">Anticodon-binding domain of tRNA ligase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002300" class="t">IPR002300</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002301" class="t">IPR002301</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009008" class="t">IPR009008</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013155" class="t">IPR013155</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:266:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:267:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13482">13482</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13482&pViewType=protein">13610</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_3:1792512-1794016">scaffold_3:1792512-1794016 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE513288_13262_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:267:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:267:j_id58"><div class="term"><span class="t">KOG2971</span><span class="n">RNA-binding protein required for biogenesis of the ribosomal 60S subunit</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04427" class="t">PF04427</a><span class="n">Brix domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007109" class="t">IPR007109</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004154" class="t">IPR004154</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:267:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:268:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13551">13551</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13551&pViewType=protein">13679</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:93967-93240">scaffold_4:93240-93967 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.4.103.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:268:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:268:j_id58"><div class="term"><span class="t">KOG0002</span><span class="n">60s ribosomal protein L39</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00832" class="t">PF00832</a><span class="n">Ribosomal L39 protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000077" class="t">IPR000077</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023626" class="t">IPR023626</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:268:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:269:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13570">13570</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13570&pViewType=protein">13698</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:141139-140230">scaffold_4:140230-141139 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_327_#_TRINITY_DN3009_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:269:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015934" class="t">GO:0015934</a> |
| <span class="n">large ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:269:j_id58"><div class="term"><span class="t">KOG0901</span><span class="n">60S ribosomal protein L14/L17/L23</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00238" class="t">PF00238</a><span class="n">Ribosomal protein L14p/L23e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005745" class="t">IPR005745</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000218" class="t">IPR000218</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019972" class="t">IPR019972</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023571" class="t">IPR023571</a><span class="n">missing_ipr023571</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:269:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:270:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13577">13577</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13577&pViewType=protein">13705</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:155947-153100">scaffold_4:153100-155947 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_341_#_TRINITY_DN3221_c2_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:270:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:270:j_id58"><div class="term"><span class="t">KOG0327</span><span class="n">Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.4.13" class="t">EC:3.6.4.13</a><span class="n">RNA helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00270" class="t">PF00270</a><span class="n">DEAD/DEAH box helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00271" class="t">PF00271</a><span class="n">Helicase conserved C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014001" class="t">IPR014001</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001650" class="t">IPR001650</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014014" class="t">IPR014014</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011545" class="t">IPR011545</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=3.A.18.1.1&acc=O00422" class="t">3.A.18.1.1</a><span class="n">The nuclear mRNA Export Complex (mRNA-E also called TREX) (including the exon junction complex) [TAP+p15 interact as a complex with the nuclear pore to facilitate mRNA transport to the cytoplasm] (Nojimma et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:270:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:271:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13603">13603</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13603&pViewType=protein">13731</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:226852-231804">scaffold_4:226852-231804 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.4.292.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:271:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008152" class="t">GO:0008152</a> |
| <span class="n">metabolic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0031177" class="t">GO:0031177</a> |
| <span class="n">phosphopantetheine binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:271:j_id58"><div class="term"><span class="t">KOG1178</span><span class="n">Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.3.2.26" class="t">EC:6.3.2.26</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00550" class="t">PF00550</a><span class="n">Phosphopantetheine attachment site</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00501" class="t">PF00501</a><span class="n">AMP-binding enzyme</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00668" class="t">PF00668</a><span class="n">Condensation domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001242" class="t">IPR001242</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020845" class="t">IPR020845</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000873" class="t">IPR000873</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009081" class="t">IPR009081</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006162" class="t">IPR006162</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020806" class="t">IPR020806</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:271:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:272:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13605">13605</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13605&pViewType=protein">13733</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:234001-234787">scaffold_4:234001-234787 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_476_#_TRINITY_DN4342_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:272:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:272:j_id58"><div class="term"><span class="t">KOG4612</span><span class="n">Mitochondrial ribosomal protein L34</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00468" class="t">PF00468</a><span class="n">Ribosomal protein L34</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000271" class="t">IPR000271</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:272:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:273:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13610">13610</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13610&pViewType=protein">13738</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:244505-243156">scaffold_4:243156-244505 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_40180_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:273:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008097" class="t">GO:0008097</a> |
| <span class="n">5S rRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:273:j_id58"><div class="term"><span class="t">KOG0875</span><span class="n">60S ribosomal protein L5</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14204" class="t">PF14204</a><span class="n">Ribosomal L18 C-terminal region</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00861" class="t">PF00861</a><span class="n">Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025607" class="t">IPR025607</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005485" class="t">IPR005485</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005484" class="t">IPR005484</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:273:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:274:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13634">13634</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13634&pViewType=protein">13762</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:316987-315028">scaffold_4:315028-316987 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_602_#_TRINITY_DN130_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:274:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:274:j_id58"><div class="term"><span class="t">KOG2767</span><span class="n">Translation initiation factor 5 (eIF-5)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02020" class="t">PF02020</a><span class="n">eIF4-gamma/eIF5/eIF2-epsilon</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01873" class="t">PF01873</a><span class="n">Domain found in IF2B/IF5</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016190" class="t">IPR016190</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002735" class="t">IPR002735</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003307" class="t">IPR003307</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016189" class="t">IPR016189</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:274:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:275:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13646">13646</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13646&pViewType=protein">13774</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:344533-341492">scaffold_4:341492-344533 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.2491_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:275:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:275:j_id58"><div class="term"><span class="t">KOG1488</span><span class="n">Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00806" class="t">PF00806</a><span class="n">Pumilio-family RNA binding repeat</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001313" class="t">IPR001313</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:275:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:276:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13669">13669</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13669&pViewType=protein">13797</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:397519-394506">scaffold_4:394506-397519 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_789_#_TRINITY_DN1913_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:276:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008152" class="t">GO:0008152</a> |
| <span class="n">metabolic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009058" class="t">GO:0009058</a> |
| <span class="n">biosynthetic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016833" class="t">GO:0016833</a> |
| <span class="n">oxo-acid-lyase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:276:j_id58"><div class="term"><span class="t">KOG1224</span><span class="n">Para-aminobenzoate (PABA) synthase ABZ1</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.6.1.85" class="t">EC:2.6.1.85</a><span class="n">aminodeoxychorismate synthase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00117" class="t">PF00117</a><span class="n">Glutamine amidotransferase class-I</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04715" class="t">PF04715</a><span class="n">Anthranilate synthase component I, N terminal region</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00425" class="t">PF00425</a><span class="n">chorismate binding enzyme</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019999" class="t">IPR019999</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005801" class="t">IPR005801</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029062" class="t">IPR029062</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017926" class="t">IPR017926</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006805" class="t">IPR006805</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015890" class="t">IPR015890</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006221" class="t">IPR006221</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:276:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:277:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13673">13673</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13673&pViewType=protein">13801</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:414300-416918">scaffold_4:414300-416918 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE537701_23836_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:277:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:277:j_id58"><div class="term"><span class="t">KOG2963</span><span class="n">RNA-binding protein required for 60S ribosomal subunit biogenesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04427" class="t">PF04427</a><span class="n">Brix domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007109" class="t">IPR007109</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:277:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:278:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13675">13675</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13675&pViewType=protein">13803</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:421918-419699">scaffold_4:419699-421918 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_800_#_TRINITY_DN1499_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:278:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004525" class="t">GO:0004525</a> |
| <span class="n">ribonuclease III activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006396" class="t">GO:0006396</a> |
| <span class="n">RNA processing</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:278:j_id58"><div class="term"><span class="t">KOG3769</span><span class="n">Ribonuclease III domain proteins</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.26.-" class="t">EC:3.1.26.-</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000999" class="t">IPR000999</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:278:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:279:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13683">13683</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13683&pViewType=protein">13811</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:439605-436157">scaffold_4:436157-439605 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_40292_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:279:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016887" class="t">GO:0016887</a> |
| <span class="n">ATP hydrolysis activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:279:j_id58"><div class="term"><span class="t">KOG0062</span><span class="n">ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.3.44" class="t">EC:3.6.3.44</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12848" class="t">PF12848</a><span class="n">ABC transporter</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00005" class="t">PF00005</a><span class="n">ABC transporter</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003439" class="t">IPR003439</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017871" class="t">IPR017871</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003593" class="t">IPR003593</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=3.A.1.121.4" class="t">3.A.1.121.4</a><span class="n">The two component ABC-4-type transporter (Rafii and Park, 2008). Transports multiple drugs including ethidium and fluoroquinolones.</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:279:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:280:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13689">13689</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13689&pViewType=protein">13817</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:451147-452777">scaffold_4:451147-452777 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_864_#_TRINITY_DN1947_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:280:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003824" class="t">GO:0003824</a> |
| <span class="n">catalytic activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005730" class="t">GO:0005730</a> |
| <span class="n">nucleolus</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:280:j_id58"><div class="term"><span class="t">KOG3980</span><span class="n">RNA 3'-terminal phosphate cyclase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.5.1.4" class="t">EC:6.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01137" class="t">PF01137</a><span class="n">RNA 3'-terminal phosphate cyclase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05189" class="t">PF05189</a><span class="n">RNA 3'-terminal phosphate cyclase (RTC), insert domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013791" class="t">IPR013791</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016443" class="t">IPR016443</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023797" class="t">IPR023797</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020719" class="t">IPR020719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013792" class="t">IPR013792</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:280:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:281:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13707">13707</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13707&pViewType=protein">13835</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:492886-491509">scaffold_4:491509-492886 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_40199_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:281:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:281:j_id58"><div class="term"><span class="t">KOG4771</span><span class="n">Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09420" class="t">PF09420</a><span class="n">Ribosome biogenesis protein Nop16</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019002" class="t">IPR019002</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:281:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:282:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13717">13717</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13717&pViewType=protein">13845</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:515269-514418">scaffold_4:514418-515269 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.4.227.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:282:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016787" class="t">GO:0016787</a> |
| <span class="n">hydrolase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:282:j_id58"><div class="term"><span class="t">KOG4548</span><span class="n">Mitochondrial ribosomal protein L17</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf11788" class="t">PF11788</a><span class="n">39S mitochondrial ribosomal protein L46</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00293" class="t">PF00293</a><span class="n">NUDIX domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000086" class="t">IPR000086</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021757" class="t">IPR021757</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015797" class="t">IPR015797</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020476" class="t">IPR020476</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020084" class="t">IPR020084</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:282:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:283:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13735">13735</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13735&pViewType=protein">13863</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:552050-555490">scaffold_4:552050-555490 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_1034_#_TRINITY_DN2874_c2_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:283:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:283:j_id58"><div class="term"><span class="t">KOG0201</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:283:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:284:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13756">13756</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13756&pViewType=protein">13884</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:629144-628023">scaffold_4:628023-629144 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.4_#_1201_#_TRINITY_DN3305_c2_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:284:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:284:j_id58"><div class="term"><span class="t">KOG0398</span><span class="n">Mitochondrial/chloroplast ribosomal protein L5/L7</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00673" class="t">PF00673</a><span class="n">ribosomal L5P family C-terminus</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022803" class="t">IPR022803</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002132" class="t">IPR002132</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:284:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:285:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13761">13761</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13761&pViewType=protein">13889</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_4:640505-641434">scaffold_4:640505-641434 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.4.168.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:285:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:285:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.11" class="t">EC:2.7.11.11</a><span class="n">cAMP-dependent protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008266" class="t">IPR008266</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=1.A.26.1.1&acc=Q45121" class="t">1.A.26.1.1</a><span class="n">Mg2+, Co2+ transporter, MgtE (Smith et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:285:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:286:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13779">13779</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13779&pViewType=protein">13907</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:39180-41133">scaffold_5:39180-41133 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.2617_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:286:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005852" class="t">GO:0005852</a> |
| <span class="n">eukaryotic translation initiation factor 3 complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:286:j_id58"><div class="term"><span class="t">KOG2479</span><span class="n">Translation initiation factor 3, subunit d (eIF-3d)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05091" class="t">PF05091</a><span class="n">Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007783" class="t">IPR007783</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:286:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:287:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13791">13791</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13791&pViewType=protein">13919</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:68127-65647">scaffold_5:65647-68127 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_132_#_TRINITY_DN1082_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:287:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:287:j_id58"><div class="term"><span class="t">KOG1212</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020556" class="t">IPR020556</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:287:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:288:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13794">13794</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13794&pViewType=protein">13922</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:72394-74975">scaffold_5:72394-74975 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_138_#_TRINITY_DN1963_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:288:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:288:j_id58"><div class="term"><span class="t">KOG1486</span><span class="n">GTP-binding protein DRG2 (ODN superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02824" class="t">PF02824</a><span class="n">TGS domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012676" class="t">IPR012676</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004095" class="t">IPR004095</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006074" class="t">IPR006074</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:288:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:289:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13818">13818</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13818&pViewType=protein">13946</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:121534-118725">scaffold_5:118725-121534 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE554038_1012_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:289:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016020" class="t">GO:0016020</a> |
| <span class="n">membrane</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0055085" class="t">GO:0055085</a> |
| <span class="n">transmembrane transport</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:289:j_id58"><div class="term"><span class="t">KOG0255</span><span class="n">Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07690" class="t">PF07690</a><span class="n">Major Facilitator Superfamily</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020846" class="t">IPR020846</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011701" class="t">IPR011701</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=2.A.1.2.33&acc=P53389" class="t">2.A.1.2.33</a><span class="n">The Hol1 MFS transporter (Mutation allows the uptake of histidinol and other cations (Wright et al., 1996)</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:289:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:290:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13847">13847</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13847&pViewType=protein">13975</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:196289-194623">scaffold_5:194623-196289 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_349_#_TRINITY_DN2491_c0_g1_i7_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:290:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008270" class="t">GO:0008270</a> |
| <span class="n">zinc ion binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:290:j_id58"><div class="term"><span class="t">KOG3070</span><span class="n">Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00098" class="t">PF00098</a><span class="n">Zinc knuckle</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001878" class="t">IPR001878</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:290:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:291:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13849">13849</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13849&pViewType=protein">13977</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:200945-199091">scaffold_5:199091-200945 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_358_#_TRINITY_DN2661_c0_g1_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:291:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0007165" class="t">GO:0007165</a> |
| <span class="n">signal transduction</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:291:j_id58"><div class="term"><span class="t">KOG2710</span><span class="n">Rho GTPase-activating protein</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00620" class="t">PF00620</a><span class="n">RhoGAP domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000198" class="t">IPR000198</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008936" class="t">IPR008936</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=9.A.1.1.1&acc=Q15311" class="t">9.A.1.1.1</a><span class="n">The RalA binding protein 1 (RalBP1 or RLIP76) multidrug exporter (Awasthi et al., 2000; Sharma et al., 2001; Awasthi et al., 2007).</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:291:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:292:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13853">13853</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13853&pViewType=protein">13981</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:209635-210848">scaffold_5:209635-210848 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_369_#_TRINITY_DN1486_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:292:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:292:j_id58"><div class="term"><span class="t">KOG1723</span><span class="n">60s ribosomal protein L30 isolog</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01246" class="t">PF01246</a><span class="n">Ribosomal protein L24e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000988" class="t">IPR000988</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:292:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:293:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13872">13872</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13872&pViewType=protein">14000</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:254139-253378">scaffold_5:253378-254139 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_429_#_TRINITY_DN3196_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:293:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:293:j_id58"><div class="term"><span class="t">KOG4034</span><span class="n">Uncharacterized conserved protein NOF (Neighbor of FAU)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05046" class="t">PF05046</a><span class="n">Mitochondrial large subunit ribosomal protein (Img2)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007740" class="t">IPR007740</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:293:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:294:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13895">13895</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13895&pViewType=protein">14023</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:303527-305693">scaffold_5:303527-305693 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE559734_10465_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:294:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000469" class="t">GO:0000469</a> |
| <span class="n">obsolete cleavage involved in rRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004521" class="t">GO:0004521</a> |
| <span class="n">RNA endonuclease activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042274" class="t">GO:0042274</a> |
| <span class="n">ribosomal small subunit biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:294:j_id58"><div class="term"><span class="t">KOG2463</span><span class="n">Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08772" class="t">PF08772</a><span class="n">Nin one binding (NOB1) Zn-ribbon like</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014881" class="t">IPR014881</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017117" class="t">IPR017117</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:294:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:295:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13898">13898</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13898&pViewType=protein">14026</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:310771-309623">scaffold_5:309623-310771 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_509_#_TRINITY_DN3191_c6_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:295:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:295:j_id58"><div class="term"><span class="t">KOG1728</span><span class="n">40S ribosomal protein S11</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00366" class="t">PF00366</a><span class="n">Ribosomal protein S17</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000266" class="t">IPR000266</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019979" class="t">IPR019979</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:295:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:296:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13905">13905</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13905&pViewType=protein">14033</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:327234-323435">scaffold_5:323435-327234 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE560479_33214_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:296:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0032040" class="t">GO:0032040</a> |
| <span class="n">small-subunit processome</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:296:j_id58"><div class="term"><span class="t">KOG2147</span><span class="n">Nucleolar protein involved in 40S ribosome biogenesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04147" class="t">PF04147</a><span class="n">Nop14-like family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007276" class="t">IPR007276</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:296:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:297:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13911">13911</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13911&pViewType=protein">14039</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:338483-339785">scaffold_5:338483-339785 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE560607_7700_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:297:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:297:j_id58"><div class="term"><span class="t">KOG2899</span><span class="n">Predicted methyltransferase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.-" class="t">EC:2.1.1.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06859" class="t">PF06859</a><span class="n">Bicoid-interacting protein 3 (Bin3)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06325" class="t">PF06325</a><span class="n">Ribosomal protein L11 methyltransferase (PrmA)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024160" class="t">IPR024160</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010675" class="t">IPR010675</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:297:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:298:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13942">13942</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13942&pViewType=protein">14070</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:413015-414293">scaffold_5:413015-414293 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_631_#_TRINITY_DN179_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:298:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:298:j_id58"><div class="term"><span class="t">KOG2815</span><span class="n">Mitochondrial/choloroplast ribosomal protein S15</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00312" class="t">PF00312</a><span class="n">Ribosomal protein S15</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005290" class="t">IPR005290</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000589" class="t">IPR000589</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009068" class="t">IPR009068</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:298:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:299:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=13952">13952</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=13952&pViewType=protein">14080</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:434686-438919">scaffold_5:434686-438919 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_658_#_TRINITY_DN3456_c3_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:299:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004386" class="t">GO:0004386</a> |
| <span class="n">helicase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:299:j_id58"><div class="term"><span class="t">KOG0926</span><span class="n">DEAH-box RNA helicase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.4.13" class="t">EC:3.6.4.13</a><span class="n">RNA helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00271" class="t">PF00271</a><span class="n">Helicase conserved C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00270" class="t">PF00270</a><span class="n">DEAD/DEAH box helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04408" class="t">PF04408</a><span class="n">Helicase associated domain (HA2)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07717" class="t">PF07717</a><span class="n">Oligonucleotide/oligosaccharide-binding (OB)-fold</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014001" class="t">IPR014001</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007502" class="t">IPR007502</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001650" class="t">IPR001650</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002464" class="t">IPR002464</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011545" class="t">IPR011545</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011709" class="t">IPR011709</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003593" class="t">IPR003593</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:299:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:300:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14009">14009</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14009&pViewType=protein">14137</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:577453-576009">scaffold_5:576009-577453 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_5_t10334_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:300:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:300:j_id58"><div class="term"><span class="t">KOG3280</span><span class="n">Mitochondrial/chloroplast ribosomal protein L17</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01196" class="t">PF01196</a><span class="n">Ribosomal protein L17</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000456" class="t">IPR000456</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:300:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:301:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14042">14042</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14042&pViewType=protein">14170</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:666098-667197">scaffold_5:666098-667197 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_894_#_TRINITY_DN771_c0_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:301:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019843" class="t">GO:0019843</a> |
| <span class="n">rRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:301:j_id58"><div class="term"><span class="t">KOG4655</span><span class="n">U3 small nucleolar ribonucleoprotein (snoRNP) component</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00163" class="t">PF00163</a><span class="n">Ribosomal protein S4/S9 N-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01479" class="t">PF01479</a><span class="n">S4 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002942" class="t">IPR002942</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001912" class="t">IPR001912</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:301:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:302:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14065">14065</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14065&pViewType=protein">14193</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:711946-713768">scaffold_5:711946-713768 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_953_#_TRINITY_DN2288_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:302:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:302:j_id58"><div class="term"><span class="t">KOG3073</span><span class="n">Protein required for 18S rRNA maturation and 40S ribosome biogenesis</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.260" class="t">EC:2.1.1.260</a><span class="n">rRNA small subunit pseudouridine methyltransferase Nep1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03587" class="t">PF03587</a><span class="n">EMG1/NEP1 methyltransferase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029028" class="t">IPR029028</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005304" class="t">IPR005304</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:302:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:303:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14080">14080</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14080&pViewType=protein">14208</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:751875-754606">scaffold_5:751875-754606 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_5_t10300_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:303:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005852" class="t">GO:0005852</a> |
| <span class="n">eukaryotic translation initiation factor 3 complex</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0031369" class="t">GO:0031369</a> |
| <span class="n">translation initiation factor binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:303:j_id58"><div class="term"><span class="t">KOG2314</span><span class="n">Translation initiation factor 3, subunit b (eIF-3b)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08662" class="t">PF08662</a><span class="n">Eukaryotic translation initiation factor eIF2A</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013979" class="t">IPR013979</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011400" class="t">IPR011400</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:303:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:304:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14093">14093</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14093&pViewType=protein">14221</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:779589-783364">scaffold_5:779589-783364 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1039_#_TRINITY_DN1429_c1_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:304:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:304:j_id58"><div class="term"><span class="t">KOG0469</span><span class="n">Elongation factor 2</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.5.-" class="t">EC:3.6.5.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03764" class="t">PF03764</a><span class="n">Elongation factor G, domain IV</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14492" class="t">PF14492</a><span class="n">Elongation Factor G, domain III</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00679" class="t">PF00679</a><span class="n">Elongation factor G C-terminus</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000640" class="t">IPR000640</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005517" class="t">IPR005517</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009022" class="t">IPR009022</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:304:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:305:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14094">14094</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14094&pViewType=protein">14222</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:783636-785944">scaffold_5:783636-785944 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.2916_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:305:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:305:j_id58"><div class="term"><span class="t">KOG2539</span><span class="n">Mitochondrial/chloroplast ribosome small subunit component</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09243" class="t">PF09243</a><span class="n">Mitochondrial small ribosomal subunit Rsm22</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015324" class="t">IPR015324</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:305:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:306:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14095">14095</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14095&pViewType=protein">14223</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:787168-786431">scaffold_5:786431-787168 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.2917_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:306:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:306:j_id58"><div class="term"><span class="t">KOG0469</span><span class="n">Elongation factor 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00679" class="t">PF00679</a><span class="n">Elongation factor G C-terminus</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000640" class="t">IPR000640</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009022" class="t">IPR009022</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:306:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:307:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14104">14104</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14104&pViewType=protein">14232</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:813868-812074">scaffold_5:812074-813868 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.5.724.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:307:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005852" class="t">GO:0005852</a> |
| <span class="n">eukaryotic translation initiation factor 3 complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:307:j_id58"><div class="term"><span class="t">KOG2758</span><span class="n">Translation initiation factor 3, subunit e (eIF-3e)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09440" class="t">PF09440</a><span class="n">eIF3 subunit 6 N terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01399" class="t">PF01399</a><span class="n">PCI domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019010" class="t">IPR019010</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000717" class="t">IPR000717</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016650" class="t">IPR016650</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:307:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:308:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14147">14147</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14147&pViewType=protein">14275</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:926938-925037">scaffold_5:925037-926938 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genemark1.C_5_t10363_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:308:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:308:j_id58"><div class="term"><span class="t">KOG0302</span><span class="n">Ribosome Assembly protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00400" class="t">PF00400</a><span class="n">WD domain, G-beta repeat</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12265" class="t">PF12265</a><span class="n">Histone-binding protein RBBP4 or subunit C of CAF1 complex</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022052" class="t">IPR022052</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017986" class="t">IPR017986</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019775" class="t">IPR019775</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001680" class="t">IPR001680</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020472" class="t">IPR020472</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:308:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:309:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14153">14153</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14153&pViewType=protein">14281</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:937212-938671">scaffold_5:937212-938671 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.5_#_193_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:309:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:309:j_id58"><div class="term"><span class="t">KOG1164</span><span class="n">Casein kinase (serine/threonine/tyrosine protein kinase)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:309:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:310:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14156">14156</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14156&pViewType=protein">14284</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:944558-943585">scaffold_5:943585-944558 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.5.372.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:310:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:310:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf15341" class="t">PF15341</a><span class="n">Ribosome biogenesis protein SLX9</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:310:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:311:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14175">14175</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14175&pViewType=protein">14303</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:986328-987350">scaffold_5:986328-987350 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.2992_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:311:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:311:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf10937" class="t">PF10937</a><span class="n">Ribosomal protein S36, mitochondrial</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020373" class="t">IPR020373</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:311:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:312:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14180">14180</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14180&pViewType=protein">14308</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:993784-996912">scaffold_5:993784-996912 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1240_#_TRINITY_DN2620_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:312:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:312:j_id58"><div class="term"><span class="t">KOG0603</span><span class="n">Ribosomal protein S6 kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.-" class="t">EC:2.7.11.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00498" class="t">PF00498</a><span class="n">FHA domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000253" class="t">IPR000253</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008984" class="t">IPR008984</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:312:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:313:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14200">14200</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14200&pViewType=protein">14328</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1045406-1047677">scaffold_5:1045406-1047677 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pm.C_50222_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:313:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:313:j_id58"><div class="term"><span class="t">KOG1569</span><span class="n">50S ribosomal protein L1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00687" class="t">PF00687</a><span class="n">Ribosomal protein L1p/L10e family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023674" class="t">IPR023674</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR028364" class="t">IPR028364</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:313:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:314:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14225">14225</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14225&pViewType=protein">14353</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1099938-1101615">scaffold_5:1099938-1101615 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.5.958.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:314:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004828" class="t">GO:0004828</a> |
| <span class="n">serine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006434" class="t">GO:0006434</a> |
| <span class="n">seryl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:314:j_id58"><div class="term"><span class="t">KOG2509</span><span class="n">Seryl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.11" class="t">EC:6.1.1.11</a><span class="n">serine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00587" class="t">PF00587</a><span class="n">tRNA synthetase class II core domain (G, H, P, S and T)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02403" class="t">PF02403</a><span class="n">Seryl-tRNA synthetase N-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010978" class="t">IPR010978</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015866" class="t">IPR015866</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002314" class="t">IPR002314</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002317" class="t">IPR002317</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:314:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:315:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14235">14235</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14235&pViewType=protein">14363</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1122384-1123037">scaffold_5:1122384-1123037 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.3051_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:315:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:315:j_id58"><div class="term"><span class="t">KOG1750</span><span class="n">Mitochondrial/chloroplast ribosomal protein S12</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00164" class="t">PF00164</a><span class="n">Ribosomal protein S12/S23</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005679" class="t">IPR005679</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006032" class="t">IPR006032</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:315:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:316:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14244">14244</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14244&pViewType=protein">14372</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1141307-1144033">scaffold_5:1141307-1144033 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.3058_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:316:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:316:j_id58"><div class="term"><span class="t">KOG2423</span><span class="n">Nucleolar GTPase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.1.-" class="t">EC:3.6.1.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08153" class="t">PF08153</a><span class="n">NGP1NT (NUC091) domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR030378" class="t">IPR030378</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012971" class="t">IPR012971</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:316:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:317:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14253">14253</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14253&pViewType=protein">14381</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1165963-1169076">scaffold_5:1165963-1169076 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1482_#_TRINITY_DN1720_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:317:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:317:j_id58"><div class="term"><span class="t">KOG1424</span><span class="n">Predicted GTP-binding protein MMR1</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.1.-" class="t">EC:3.6.1.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:317:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:318:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14258">14258</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14258&pViewType=protein">14386</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1180182-1177471">scaffold_5:1177471-1180182 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1499_#_TRINITY_DN2320_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:318:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004815" class="t">GO:0004815</a> |
| <span class="n">aspartate-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006422" class="t">GO:0006422</a> |
| <span class="n">aspartyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:318:j_id58"><div class="term"><span class="t">KOG0556</span><span class="n">Aspartyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.12" class="t">EC:6.1.1.12</a><span class="n">aspartate---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00152" class="t">PF00152</a><span class="n">tRNA synthetases class II (D, K and N)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01336" class="t">PF01336</a><span class="n">OB-fold nucleic acid binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004365" class="t">IPR004365</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002312" class="t">IPR002312</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004523" class="t">IPR004523</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004364" class="t">IPR004364</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:318:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:319:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14264">14264</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14264&pViewType=protein">14392</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1192893-1191900">scaffold_5:1191900-1192893 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1518_#_TRINITY_DN2688_c2_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:319:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000178" class="t">GO:0000178</a> |
| <span class="n">exosome (RNase complex)</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:319:j_id58"><div class="term"><span class="t">KOG3409</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14382" class="t">PF14382</a><span class="n">Exosome complex exonuclease RRP4 N-terminal region</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf10447" class="t">PF10447</a><span class="n">Exosome component EXOSC1/CSL4</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003029" class="t">IPR003029</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019495" class="t">IPR019495</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025721" class="t">IPR025721</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:319:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:320:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14268">14268</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14268&pViewType=protein">14396</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1200397-1201096">scaffold_5:1200397-1201096 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.5.591.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:320:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:320:j_id58"><div class="term"><span class="t">KOG4778</span><span class="n">Mitochondrial ribosomal protein L28</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09812" class="t">PF09812</a><span class="n">Mitochondrial ribosomal protein L28</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019192" class="t">IPR019192</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:320:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:321:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14294">14294</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14294&pViewType=protein">14422</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1256609-1254899">scaffold_5:1254899-1256609 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1597_#_TRINITY_DN1823_c0_g3_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:321:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:321:j_id58"><div class="term"><span class="t">KOG3291</span><span class="n">Ribosomal protein S7</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00177" class="t">PF00177</a><span class="n">Ribosomal protein S7p/S5e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000235" class="t">IPR000235</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023798" class="t">IPR023798</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005716" class="t">IPR005716</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020606" class="t">IPR020606</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:321:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:322:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14295">14295</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14295&pViewType=protein">14423</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1256610-1257754">scaffold_5:1256610-1257754 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1601_#_TRINITY_DN1823_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:322:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:322:j_id58"><div class="term"><span class="t">KOG3502</span><span class="n">40S ribosomal protein S28</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01200" class="t">PF01200</a><span class="n">Ribosomal protein S28e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000289" class="t">IPR000289</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR028626" class="t">IPR028626</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:322:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:323:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14340">14340</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14340&pViewType=protein">14468</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1359561-1354953">scaffold_5:1354953-1359561 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1719_#_TRINITY_DN830_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:323:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:323:j_id58"><div class="term"><span class="t">KOG1144</span><span class="n">Translation initiation factor 5B (eIF-5B)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf11987" class="t">PF11987</a><span class="n">Translation-initiation factor 2</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023115" class="t">IPR023115</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:323:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:324:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14363">14363</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14363&pViewType=protein">14491</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1410284-1407863">scaffold_5:1407863-1410284 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.5.975.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:324:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:324:j_id58"><div class="term"><span class="t">KOG1424</span><span class="n">Predicted GTP-binding protein MMR1</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.1.-" class="t">EC:3.6.1.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR030378" class="t">IPR030378</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:324:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:325:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14397">14397</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14397&pViewType=protein">14525</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1482596-1481461">scaffold_5:1481461-1482596 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1869_#_TRINITY_DN3668_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:325:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004045" class="t">GO:0004045</a> |
| <span class="n">aminoacyl-tRNA hydrolase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:325:j_id58"><div class="term"><span class="t">KOG2255</span><span class="n">Peptidyl-tRNA hydrolase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.1.29" class="t">EC:3.1.1.29</a><span class="n">aminoacyl-tRNA hydrolase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01195" class="t">PF01195</a><span class="n">Peptidyl-tRNA hydrolase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001328" class="t">IPR001328</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:325:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:326:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14436">14436</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14436&pViewType=protein">14564</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1565061-1567411">scaffold_5:1565061-1567411 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1969_#_TRINITY_DN439_c2_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:326:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0001522" class="t">GO:0001522</a> |
| <span class="n">pseudouridine synthesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009451" class="t">GO:0009451</a> |
| <span class="n">RNA modification</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009982" class="t">GO:0009982</a> |
| <span class="n">pseudouridine synthase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:326:j_id58"><div class="term"><span class="t">KOG2554</span><span class="n">Pseudouridylate synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:5.4.99.45" class="t">EC:5.4.99.45</a><span class="n">tRNA pseudouridine38/39 synthase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01416" class="t">PF01416</a><span class="n">tRNA pseudouridine synthase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020103" class="t">IPR020103</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020097" class="t">IPR020097</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:326:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:327:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14437">14437</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14437&pViewType=protein">14565</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1572787-1567408">scaffold_5:1567408-1572787 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1972_#_TRINITY_DN1303_c0_g3_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:327:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:327:j_id58"><div class="term"><span class="t">KOG0198</span><span class="n">MEKK and related serine/threonine protein kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000225" class="t">IPR000225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:327:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:328:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14447">14447</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14447&pViewType=protein">14575</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1594058-1596512">scaffold_5:1594058-1596512 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_1991_#_TRINITY_DN2301_c0_g1_i8_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:328:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:328:j_id58"><div class="term"><span class="t">KOG0032</span><span class="n">Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00498" class="t">PF00498</a><span class="n">FHA domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000253" class="t">IPR000253</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008984" class="t">IPR008984</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=9.B.45.1.3&acc=D2N2E0" class="t">9.B.45.1.3</a><span class="n">α-factor receptor of 566 aas and 7 TMSs, STE2 (Turrà et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:328:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:329:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14470">14470</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14470&pViewType=protein">14598</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_5:1659942-1663330">scaffold_5:1659942-1663330 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.5_#_2070_#_TRINITY_DN2465_c1_g3_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:329:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004601" class="t">GO:0004601</a> |
| <span class="n">peroxidase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006979" class="t">GO:0006979</a> |
| <span class="n">response to oxidative stress</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0020037" class="t">GO:0020037</a> |
| <span class="n">heme binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0055114" class="t">GO:0055114</a> |
| <span class="n">obsolete oxidation-reduction process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:329:j_id58"><div class="term"><span class="t">KOG2149</span><span class="n">Uncharacterized conserved protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12333" class="t">PF12333</a><span class="n">Rix1 complex component involved in 60S ribosome maturation</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002016" class="t">IPR002016</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024679" class="t">IPR024679</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:329:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:330:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14514">14514</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14514&pViewType=protein">14642</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:119320-117279">scaffold_6:117279-119320 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_132_#_TRINITY_DN4280_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:330:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:330:j_id58"><div class="term"><span class="t">KOG0746</span><span class="n">60S ribosomal protein L3 and related proteins</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00297" class="t">PF00297</a><span class="n">Ribosomal protein L3</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000597" class="t">IPR000597</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019926" class="t">IPR019926</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:330:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:331:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14549">14549</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14549&pViewType=protein">14677</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:195745-192747">scaffold_6:192747-195745 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_6_t10105_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:331:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:331:j_id58"><div class="term"><span class="t">KOG0123</span><span class="n">Polyadenylate-binding protein (RRM superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00076" class="t">PF00076</a><span class="n">RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00658" class="t">PF00658</a><span class="n">Poly-adenylate binding protein, unique domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002004" class="t">IPR002004</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003954" class="t">IPR003954</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006515" class="t">IPR006515</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000504" class="t">IPR000504</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:331:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:332:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14565">14565</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14565&pViewType=protein">14693</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:229573-227158">scaffold_6:227158-229573 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.6_#_48_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:332:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000049" class="t">GO:0000049</a> |
| <span class="n">tRNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004818" class="t">GO:0004818</a> |
| <span class="n">glutamate-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006424" class="t">GO:0006424</a> |
| <span class="n">glutamyl-tRNA aminoacylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043039" class="t">GO:0043039</a> |
| <span class="n">tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:332:j_id58"><div class="term"><span class="t">KOG1149</span><span class="n">Glutamyl-tRNA synthetase (mitochondrial)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.17" class="t">EC:6.1.1.17</a><span class="n">glutamate---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00749" class="t">PF00749</a><span class="n">tRNA synthetases class I (E and Q), catalytic domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008925" class="t">IPR008925</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004527" class="t">IPR004527</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020058" class="t">IPR020058</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000924" class="t">IPR000924</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:332:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:333:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14663">14663</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14663&pViewType=protein">14791</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:463088-466609">scaffold_6:463088-466609 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE623397_10139_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:333:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:333:j_id58"><div class="term"><span class="t">KOG1041</span><span class="n">Translation initiation factor 2C (eIF-2C) and related proteins</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02171" class="t">PF02171</a><span class="n">Piwi domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02170" class="t">PF02170</a><span class="n">PAZ domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08699" class="t">PF08699</a><span class="n">Argonaute linker 1 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003100" class="t">IPR003100</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014811" class="t">IPR014811</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012337" class="t">IPR012337</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003165" class="t">IPR003165</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:333:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:334:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14667">14667</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14667&pViewType=protein">14795</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:473902-475228">scaffold_6:473902-475228 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.6_#_102_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:334:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:334:j_id58"><div class="term"><span class="t">KOG2917</span><span class="n">Predicted exosome subunit</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09377" class="t">PF09377</a><span class="n">SBDS protein, domain II</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01172" class="t">PF01172</a><span class="n">Shwachman-Bodian-Diamond syndrome (SBDS) protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018978" class="t">IPR018978</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002140" class="t">IPR002140</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019783" class="t">IPR019783</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:334:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:335:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14707">14707</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14707&pViewType=protein">14835</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:585108-582452">scaffold_6:582452-585108 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_816_#_TRINITY_DN2963_c1_g2_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:335:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006415" class="t">GO:0006415</a> |
| <span class="n">translational termination</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016149" class="t">GO:0016149</a> |
| <span class="n">translation release factor activity, codon specific</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:335:j_id58"><div class="term"><span class="t">KOG0688</span><span class="n">Peptide chain release factor 1 (eRF1)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03463" class="t">PF03463</a><span class="n">eRF1 domain 1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03464" class="t">PF03464</a><span class="n">eRF1 domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03465" class="t">PF03465</a><span class="n">eRF1 domain 3</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004403" class="t">IPR004403</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005140" class="t">IPR005140</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005141" class="t">IPR005141</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029064" class="t">IPR029064</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024049" class="t">IPR024049</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005142" class="t">IPR005142</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:335:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:336:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14709">14709</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14709&pViewType=protein">14837</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:587053-588639">scaffold_6:587053-588639 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.3491_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:336:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004830" class="t">GO:0004830</a> |
| <span class="n">tryptophan-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006436" class="t">GO:0006436</a> |
| <span class="n">tryptophanyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:336:j_id58"><div class="term"><span class="t">KOG2145</span><span class="n">Cytoplasmic tryptophanyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.2" class="t">EC:6.1.1.2</a><span class="n">tryptophan---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00579" class="t">PF00579</a><span class="n">tRNA synthetases class I (W and Y)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002306" class="t">IPR002306</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002305" class="t">IPR002305</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:336:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:337:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14719">14719</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14719&pViewType=protein">14847</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:613551-612108">scaffold_6:612108-613551 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_854_#_TRINITY_DN2560_c2_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:337:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:337:j_id58"><div class="term"><span class="t">KOG3283</span><span class="n">40S ribosomal protein S8</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01201" class="t">PF01201</a><span class="n">Ribosomal protein S8e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022309" class="t">IPR022309</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001047" class="t">IPR001047</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:337:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:338:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14720">14720</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14720&pViewType=protein">14848</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:614184-615343">scaffold_6:614184-615343 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_857_#_TRINITY_DN2560_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:338:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:338:j_id58"><div class="term"><span class="t">KOG3506</span><span class="n">40S ribosomal protein S29</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00253" class="t">PF00253</a><span class="n">Ribosomal protein S14p/S29e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018271" class="t">IPR018271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001209" class="t">IPR001209</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:338:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:339:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14729">14729</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14729&pViewType=protein">14857</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:638035-634775">scaffold_6:634775-638035 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_6_t10346_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:339:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:339:j_id58"><div class="term"><span class="t">KOG1290</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:339:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:340:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14736">14736</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14736&pViewType=protein">14864</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:653420-651947">scaffold_6:651947-653420 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.6.403.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:340:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:340:j_id58"><div class="term"><span class="t">KOG2049</span><span class="n">Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00806" class="t">PF00806</a><span class="n">Pumilio-family RNA binding repeat</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001313" class="t">IPR001313</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:340:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:341:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14758">14758</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14758&pViewType=protein">14886</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:703024-699825">scaffold_6:699825-703024 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_967_#_TRINITY_DN3250_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:341:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:341:j_id58"><div class="term"><span class="t">KOG0605</span><span class="n">NDR and related serine/threonine kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000961" class="t">IPR000961</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:341:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:342:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14765">14765</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14765&pViewType=protein">14893</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:719229-720457">scaffold_6:719229-720457 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_6_t10405_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:342:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:342:j_id58"><div class="term"><span class="t">KOG1768</span><span class="n">40s ribosomal protein S26</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01283" class="t">PF01283</a><span class="n">Ribosomal protein S26e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000892" class="t">IPR000892</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:342:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:343:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14857">14857</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14857&pViewType=protein">14985</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:911590-907588">scaffold_6:907588-911590 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_1287_#_TRINITY_DN1808_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:343:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:343:j_id58"><div class="term"><span class="t">KOG0327</span><span class="n">Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00270" class="t">PF00270</a><span class="n">DEAD/DEAH box helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00271" class="t">PF00271</a><span class="n">Helicase conserved C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014001" class="t">IPR014001</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001650" class="t">IPR001650</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014014" class="t">IPR014014</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011545" class="t">IPR011545</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:343:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:344:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14858">14858</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14858&pViewType=protein">14986</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:911591-912488">scaffold_6:911591-912488 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_1288_#_TRINITY_DN1808_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:344:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:344:j_id58"><div class="term"><span class="t">KOG1698</span><span class="n">Mitochondrial/chloroplast ribosomal protein L19</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01245" class="t">PF01245</a><span class="n">Ribosomal protein L19</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001857" class="t">IPR001857</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:344:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:345:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14862">14862</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14862&pViewType=protein">14990</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:921118-925522">scaffold_6:921118-925522 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">MIX22668_6674_26_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:345:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:345:j_id58"><div class="term"><span class="t">KOG2885</span><span class="n">Uncharacterized conserved protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf15459" class="t">PF15459</a><span class="n">60S ribosome biogenesis protein Rrp14</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04935" class="t">PF04935</a><span class="n">Surfeit locus protein 6</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029190" class="t">IPR029190</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029188" class="t">IPR029188</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:345:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:346:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14868">14868</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14868&pViewType=protein">14996</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:933472-935504">scaffold_6:933472-935504 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE643498_29191_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:346:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:346:j_id58"><div class="term"><span class="t">KOG0458</span><span class="n">Elongation factor 1 alpha</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.43" class="t">EC:2.1.1.43</a><span class="n">Transferred to 2.1.1.354 and 2.1.1.355 and 2.1.1.356 and 2.1.1.357 and 2.1.1.358 and 2.1.1.359 and 2.1.1.360 and 2.1.1.361 and 2.1.1.362</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03143" class="t">PF03143</a><span class="n">Elongation factor Tu C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004160" class="t">IPR004160</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009001" class="t">IPR009001</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:346:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:347:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14870">14870</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14870&pViewType=protein">14998</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:938827-937793">scaffold_6:937793-938827 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_1335_#_TRINITY_DN3418_c4_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:347:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:347:j_id58"><div class="term"><span class="t">KOG3486</span><span class="n">40S ribosomal protein S21</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01249" class="t">PF01249</a><span class="n">Ribosomal protein S21e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001931" class="t">IPR001931</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018279" class="t">IPR018279</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:347:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:348:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14907">14907</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14907&pViewType=protein">15035</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:1028539-1031379">scaffold_6:1028539-1031379 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.6.552.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:348:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:348:j_id58"><div class="term"><span class="t">KOG0598</span><span class="n">Ribosomal protein S6 kinase and related proteins</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.-" class="t">EC:2.7.11.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00433" class="t">PF00433</a><span class="n">Protein kinase C terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00168" class="t">PF00168</a><span class="n">C2 domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000961" class="t">IPR000961</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000008" class="t">IPR000008</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017892" class="t">IPR017892</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:348:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:349:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14937">14937</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14937&pViewType=protein">15065</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:1122107-1122716">scaffold_6:1122107-1122716 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.3699_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:349:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:349:j_id58"><div class="term"><span class="t">KOG1779</span><span class="n">40s ribosomal protein S27</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01667" class="t">PF01667</a><span class="n">Ribosomal protein S27</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000592" class="t">IPR000592</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011332" class="t">IPR011332</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:349:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:350:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14964">14964</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14964&pViewType=protein">15092</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:1188701-1189944">scaffold_6:1188701-1189944 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_6_t20222_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:350:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015934" class="t">GO:0015934</a> |
| <span class="n">large ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:350:j_id58"><div class="term"><span class="t">KOG3401</span><span class="n">60S ribosomal protein L26</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00467" class="t">PF00467</a><span class="n">KOW motif</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005824" class="t">IPR005824</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005756" class="t">IPR005756</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005825" class="t">IPR005825</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:350:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:351:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=14988">14988</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=14988&pViewType=protein">15116</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:1267860-1267271">scaffold_6:1267271-1267860 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.6.462.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:351:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:351:j_id58"><div class="term"><span class="t">KOG1715</span><span class="n">Mitochondrial/chloroplast ribosomal protein L12</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00542" class="t">PF00542</a><span class="n">Ribosomal protein L7/L12 C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008932" class="t">IPR008932</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013823" class="t">IPR013823</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014719" class="t">IPR014719</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:351:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:352:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15020">15020</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15020&pViewType=protein">15148</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:1353191-1351919">scaffold_6:1351919-1353191 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_1778_#_TRINITY_DN2680_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:352:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:352:j_id58"><div class="term"><span class="t">KOG1767</span><span class="n">40S ribosomal protein S25</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03297" class="t">PF03297</a><span class="n">S25 ribosomal protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004977" class="t">IPR004977</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:352:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:353:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15054">15054</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15054&pViewType=protein">15182</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_6:1439257-1440627">scaffold_6:1439257-1440627 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.6_#_1906_#_TRINITY_DN1559_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:353:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:353:j_id58"><div class="term"><span class="t">KOG3421</span><span class="n">60S ribosomal protein L14</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01929" class="t">PF01929</a><span class="n">Ribosomal protein L14</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00467" class="t">PF00467</a><span class="n">KOW motif</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002784" class="t">IPR002784</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005824" class="t">IPR005824</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:353:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:354:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15093">15093</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15093&pViewType=protein">15221</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1392-60">scaffold_7:60-1392 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_5_#_TRINITY_DN1843_c1_g1_i6_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:354:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:354:j_id58"><div class="term"><span class="t">KOG2523</span><span class="n">Predicted RNA-binding protein with PUA domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01472" class="t">PF01472</a><span class="n">PUA domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004521" class="t">IPR004521</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002478" class="t">IPR002478</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015947" class="t">IPR015947</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:354:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:355:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15124">15124</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15124&pViewType=protein">15252</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:66980-68310">scaffold_7:66980-68310 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_117_#_TRINITY_DN1940_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:355:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:355:j_id58"><div class="term"><span class="t">KOG3141</span><span class="n">Mitochondrial/chloroplast ribosomal protein L3</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00297" class="t">PF00297</a><span class="n">Ribosomal protein L3</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000597" class="t">IPR000597</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019926" class="t">IPR019926</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019927" class="t">IPR019927</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:355:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:356:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15130">15130</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15130&pViewType=protein">15258</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:81347-80361">scaffold_7:80361-81347 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_141_#_TRINITY_DN621_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:356:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:356:j_id58"><div class="term"><span class="t">KOG1762</span><span class="n">60s acidic ribosomal protein P1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00428" class="t">PF00428</a><span class="n">60s Acidic ribosomal protein</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:356:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:357:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15142">15142</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15142&pViewType=protein">15270</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:103552-104134">scaffold_7:103552-104134 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_173_#_TRINITY_DN3215_c1_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:357:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:357:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09784" class="t">PF09784</a><span class="n">Mitochondrial ribosomal protein L31</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016340" class="t">IPR016340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:357:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:358:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15143">15143</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15143&pViewType=protein">15271</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:105507-104146">scaffold_7:104146-105507 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_176_#_TRINITY_DN3303_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:358:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:358:j_id58"><div class="term"><span class="t">KOG3089</span><span class="n">Predicted DEAD-box-containing helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14617" class="t">PF14617</a><span class="n">U3-containing 90S pre-ribosomal complex subunit</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:358:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:359:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15154">15154</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15154&pViewType=protein">15282</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:125924-127269">scaffold_7:125924-127269 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_199_#_TRINITY_DN3303_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:359:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:359:j_id58"><div class="term"><span class="t">KOG3089</span><span class="n">Predicted DEAD-box-containing helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14617" class="t">PF14617</a><span class="n">U3-containing 90S pre-ribosomal complex subunit</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:359:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:360:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15155">15155</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15155&pViewType=protein">15283</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:127866-127281">scaffold_7:127281-127866 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_202_#_TRINITY_DN3215_c1_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:360:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:360:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09784" class="t">PF09784</a><span class="n">Mitochondrial ribosomal protein L31</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016340" class="t">IPR016340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:360:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:361:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15263">15263</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15263&pViewType=protein">15391</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:378340-378983">scaffold_7:378340-378983 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_496_#_TRINITY_DN1086_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:361:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:361:j_id58"><div class="term"><span class="t">KOG0556</span><span class="n">Aspartyl-tRNA synthetase</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:361:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:362:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15288">15288</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15288&pViewType=protein">15416</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:432428-434158">scaffold_7:432428-434158 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE678075_7694_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:362:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:362:j_id58"><div class="term"><span class="t">KOG1143</span><span class="n">Predicted translation elongation factor</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:362:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:363:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15299">15299</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15299&pViewType=protein">15427</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:463754-462605">scaffold_7:462605-463754 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_641_#_TRINITY_DN2816_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:363:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:363:j_id58"><div class="term"><span class="t">KOG4844</span><span class="n">Mitochondrial ribosomal protein S27</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08293" class="t">PF08293</a><span class="n">Mitochondrial ribosomal subunit S27</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013219" class="t">IPR013219</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:363:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:364:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15310">15310</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15310&pViewType=protein">15438</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:491071-493609">scaffold_7:491071-493609 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1Plus.C_7_t10339_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:364:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005852" class="t">GO:0005852</a> |
| <span class="n">eukaryotic translation initiation factor 3 complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:364:j_id58"><div class="term"><span class="t">KOG3677</span><span class="n">RNA polymerase I-associated factor - PAF67</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf10255" class="t">PF10255</a><span class="n">RNA polymerase I-associated factor PAF67</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019382" class="t">IPR019382</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:364:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:365:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15332">15332</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15332&pViewType=protein">15460</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:550832-553525">scaffold_7:550832-553525 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE682222_9344_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:365:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003677" class="t">GO:0003677</a> |
| <span class="n">DNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006355" class="t">GO:0006355</a> |
| <span class="n">regulation of DNA-templated transcription</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:365:j_id58"><div class="term"><span class="t">KOG3070</span><span class="n">Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00313" class="t">PF00313</a><span class="n">'Cold-shock' DNA-binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011129" class="t">IPR011129</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002059" class="t">IPR002059</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:365:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:366:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15363">15363</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15363&pViewType=protein">15491</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:627932-626570">scaffold_7:626570-627932 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_816_#_TRINITY_DN879_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:366:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000213" class="t">GO:0000213</a> |
| <span class="n">tRNA-intron endonuclease activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000214" class="t">GO:0000214</a> |
| <span class="n">tRNA-intron endonuclease complex</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000379" class="t">GO:0000379</a> |
| <span class="n">tRNA-type intron splice site recognition and cleavage</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006388" class="t">GO:0006388</a> |
| <span class="n">tRNA splicing, via endonucleolytic cleavage and ligation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:366:j_id58"><div class="term"><span class="t">KOG4133</span><span class="n">tRNA splicing endonuclease</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.1.27.9" class="t">EC:3.1.27.9</a><span class="n">Transferred to 4.6.1.16</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01974" class="t">PF01974</a><span class="n">tRNA intron endonuclease, catalytic C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006677" class="t">IPR006677</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016690" class="t">IPR016690</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:366:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:367:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15389">15389</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15389&pViewType=protein">15517</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:692693-694535">scaffold_7:692693-694535 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_883_#_TRINITY_DN1312_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:367:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016740" class="t">GO:0016740</a> |
| <span class="n">transferase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:367:j_id58"><div class="term"><span class="t">KOG2805</span><span class="n">tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.8.1.-" class="t">EC:2.8.1.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03054" class="t">PF03054</a><span class="n">tRNA methyl transferase HUP domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004506" class="t">IPR004506</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:367:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:368:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15395">15395</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15395&pViewType=protein">15523</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:705120-707282">scaffold_7:705120-707282 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE687742_33630_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:368:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:368:j_id58"><div class="term"><span class="t">KOG0328</span><span class="n">Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.4.13" class="t">EC:3.6.4.13</a><span class="n">RNA helicase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00271" class="t">PF00271</a><span class="n">Helicase conserved C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00270" class="t">PF00270</a><span class="n">DEAD/DEAH box helicase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014001" class="t">IPR014001</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001650" class="t">IPR001650</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014014" class="t">IPR014014</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011545" class="t">IPR011545</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000629" class="t">IPR000629</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=3.A.18.1.1&acc=O00422" class="t">3.A.18.1.1</a><span class="n">The nuclear mRNA Export Complex (mRNA-E also called TREX) (including the exon junction complex) [TAP+p15 interact as a complex with the nuclear pore to facilitate mRNA transport to the cytoplasm] (Nojimma et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:368:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:369:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15419">15419</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15419&pViewType=protein">15547</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:762979-764265">scaffold_7:762979-764265 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE690793_31756_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:369:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005852" class="t">GO:0005852</a> |
| <span class="n">eukaryotic translation initiation factor 3 complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:369:j_id58"><div class="term"><span class="t">KOG4813</span><span class="n">Translation initiation factor eIF3, p35 subunit</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08597" class="t">PF08597</a><span class="n">Translation initiation factor eIF3 subunit</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013906" class="t">IPR013906</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:369:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:370:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15442">15442</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15442&pViewType=protein">15570</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:823166-821512">scaffold_7:821512-823166 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.7.442.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:370:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:370:j_id58"><div class="term"><span class="t">KOG1165</span><span class="n">Casein kinase (serine/threonine/tyrosine protein kinase)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=9.B.45.1.3&acc=D2N2E0" class="t">9.B.45.1.3</a><span class="n">α-factor receptor of 566 aas and 7 TMSs, STE2 (Turrà et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:370:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:371:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15444">15444</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15444&pViewType=protein">15572</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:825577-826975">scaffold_7:825577-826975 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_1081_#_TRINITY_DN1479_c0_g1_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:371:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:371:j_id58"><div class="term"><span class="t">KOG3933</span><span class="n">Mitochondrial ribosomal protein S28</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf10213" class="t">PF10213</a><span class="n">Mitochondrial ribosomal subunit protein</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019349" class="t">IPR019349</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:371:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:372:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15460">15460</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15460&pViewType=protein">15588</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:866540-863308">scaffold_7:863308-866540 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4162_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:372:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:372:j_id58"><div class="term"><span class="t">KOG2545</span><span class="n">Conserved membrane protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09739" class="t">PF09739</a><span class="n">Mini-chromosome maintenance replisome factor</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf13615" class="t">PF13615</a><span class="n">obsolete_pf13615</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04758" class="t">PF04758</a><span class="n">Ribosomal protein S30</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006846" class="t">IPR006846</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019140" class="t">IPR019140</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:372:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:373:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15467">15467</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15467&pViewType=protein">15595</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:879733-880505">scaffold_7:879733-880505 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4169_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:373:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005730" class="t">GO:0005730</a> |
| <span class="n">nucleolus</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:1990904" class="t">GO:1990904</a> |
| <span class="n">ribonucleoprotein complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:373:j_id58"><div class="term"><span class="t">KOG3387</span><span class="n">60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.22" class="t">EC:2.7.11.22</a><span class="n">cyclin-dependent kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01248" class="t">PF01248</a><span class="n">Ribosomal protein L7Ae/L30e/S12e/Gadd45 family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004038" class="t">IPR004038</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004037" class="t">IPR004037</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018492" class="t">IPR018492</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002415" class="t">IPR002415</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029064" class="t">IPR029064</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:373:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:374:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15492">15492</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15492&pViewType=protein">15620</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:935718-934136">scaffold_7:934136-935718 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_1214_#_TRINITY_DN1441_c1_g3_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:374:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015934" class="t">GO:0015934</a> |
| <span class="n">large ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:374:j_id58"><div class="term"><span class="t">KOG3204</span><span class="n">60S ribosomal protein L13a</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00572" class="t">PF00572</a><span class="n">Ribosomal protein L13</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005755" class="t">IPR005755</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005822" class="t">IPR005822</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023564" class="t">IPR023564</a><span class="n">missing_ipr023564</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023563" class="t">IPR023563</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:374:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:375:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15504">15504</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15504&pViewType=protein">15632</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:961109-964008">scaffold_7:961109-964008 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_1242_#_TRINITY_DN2588_c0_g2_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:375:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004820" class="t">GO:0004820</a> |
| <span class="n">glycine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006426" class="t">GO:0006426</a> |
| <span class="n">glycyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:375:j_id58"><div class="term"><span class="t">KOG2298</span><span class="n">Glycyl-tRNA synthetase and related class II tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.14" class="t">EC:6.1.1.14</a><span class="n">glycine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00587" class="t">PF00587</a><span class="n">tRNA synthetase class II core domain (G, H, P, S and T)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03129" class="t">PF03129</a><span class="n">Anticodon binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002315" class="t">IPR002315</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002314" class="t">IPR002314</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004154" class="t">IPR004154</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:375:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:376:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15518">15518</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15518&pViewType=protein">15646</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:999141-1001312">scaffold_7:999141-1001312 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4220_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:376:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004825" class="t">GO:0004825</a> |
| <span class="n">methionine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006431" class="t">GO:0006431</a> |
| <span class="n">methionyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:376:j_id58"><div class="term"><span class="t">KOG0436</span><span class="n">Methionyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.10" class="t">EC:6.1.1.10</a><span class="n">methionine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf09334" class="t">PF09334</a><span class="n">tRNA synthetases class I (M)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015413" class="t">IPR015413</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014758" class="t">IPR014758</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:376:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:377:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15533">15533</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15533&pViewType=protein">15661</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1031482-1033004">scaffold_7:1031482-1033004 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.7.646.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:377:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004830" class="t">GO:0004830</a> |
| <span class="n">tryptophan-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006436" class="t">GO:0006436</a> |
| <span class="n">tryptophanyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:377:j_id58"><div class="term"><span class="t">KOG2713</span><span class="n">Mitochondrial tryptophanyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.2" class="t">EC:6.1.1.2</a><span class="n">tryptophan---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00579" class="t">PF00579</a><span class="n">tRNA synthetases class I (W and Y)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002306" class="t">IPR002306</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002305" class="t">IPR002305</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:377:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:378:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15541">15541</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15541&pViewType=protein">15669</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1050738-1049692">scaffold_7:1049692-1050738 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4241_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:378:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:378:j_id58"><div class="term"><span class="t">KOG3434</span><span class="n">60S ribosomal protein L22</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01776" class="t">PF01776</a><span class="n">Ribosomal L22e protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002671" class="t">IPR002671</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:378:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:379:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15542">15542</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15542&pViewType=protein">15670</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1050950-1053346">scaffold_7:1050950-1053346 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_fgenesh1_pm.C_70232_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:379:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0001522" class="t">GO:0001522</a> |
| <span class="n">pseudouridine synthesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006396" class="t">GO:0006396</a> |
| <span class="n">RNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009451" class="t">GO:0009451</a> |
| <span class="n">RNA modification</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009982" class="t">GO:0009982</a> |
| <span class="n">pseudouridine synthase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:379:j_id58"><div class="term"><span class="t">KOG2529</span><span class="n">Pseudouridine synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:5.4.99.-" class="t">EC:5.4.99.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01509" class="t">PF01509</a><span class="n">TruB family pseudouridylate synthase (N terminal domain)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01472" class="t">PF01472</a><span class="n">PUA domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08068" class="t">PF08068</a><span class="n">DKCLD (NUC011) domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004521" class="t">IPR004521</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002478" class="t">IPR002478</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020103" class="t">IPR020103</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002501" class="t">IPR002501</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015947" class="t">IPR015947</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004802" class="t">IPR004802</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012960" class="t">IPR012960</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:379:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:380:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15556">15556</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15556&pViewType=protein">15684</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1083639-1079330">scaffold_7:1079330-1083639 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_1398_#_TRINITY_DN230_c0_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:380:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0002161" class="t">GO:0002161</a> |
| <span class="n">aminoacyl-tRNA editing activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004822" class="t">GO:0004822</a> |
| <span class="n">isoleucine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006428" class="t">GO:0006428</a> |
| <span class="n">isoleucyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:380:j_id58"><div class="term"><span class="t">KOG0433</span><span class="n">Isoleucyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.5" class="t">EC:6.1.1.5</a><span class="n">isoleucine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00133" class="t">PF00133</a><span class="n">tRNA synthetases class I (I, L, M and V)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08264" class="t">PF08264</a><span class="n">Anticodon-binding domain of tRNA ligase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002300" class="t">IPR002300</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002301" class="t">IPR002301</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009008" class="t">IPR009008</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013155" class="t">IPR013155</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:380:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:381:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15557">15557</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15557&pViewType=protein">15685</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1083701-1085135">scaffold_7:1083701-1085135 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.7_#_1399_#_TRINITY_DN196_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:381:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:381:j_id58"><div class="term"><span class="t">KOG3031</span><span class="n">Protein required for biogenesis of the ribosomal 60S subunit</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04427" class="t">PF04427</a><span class="n">Brix domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007109" class="t">IPR007109</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:381:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:382:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15561">15561</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15561&pViewType=protein">15689</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1093190-1091891">scaffold_7:1091891-1093190 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gw1.7.1.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:382:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:382:j_id58"><div class="term"><span class="t">KOG1614</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp45</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03725" class="t">PF03725</a><span class="n">3' exoribonuclease family, domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01138" class="t">PF01138</a><span class="n">3' exoribonuclease family, domain 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001247" class="t">IPR001247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015847" class="t">IPR015847</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:382:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:383:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15595">15595</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15595&pViewType=protein">15723</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1176800-1178543">scaffold_7:1176800-1178543 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4291_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:383:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0044237" class="t">GO:0044237</a> |
| <span class="n">cellular metabolic process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:383:j_id58"><div class="term"><span class="t">KOG1466</span><span class="n">Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:5.3.1.23" class="t">EC:5.3.1.23</a><span class="n">S-methyl-5-thioribose-1-phosphate isomerase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01008" class="t">PF01008</a><span class="n">Initiation factor 2 subunit family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000649" class="t">IPR000649</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:383:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:384:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15602">15602</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15602&pViewType=protein">15730</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_7:1190890-1188781">scaffold_7:1188781-1190890 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE708299_22866_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:384:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:384:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf11709" class="t">PF11709</a><span class="n">Mitochondrial ribosomal protein subunit</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016712" class="t">IPR016712</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:384:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:385:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15700">15700</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15700&pViewType=protein">15828</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:27994-26472">scaffold_8:26472-27994 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.8_#_6_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:385:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008033" class="t">GO:0008033</a> |
| <span class="n">tRNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0017150" class="t">GO:0017150</a> |
| <span class="n">tRNA dihydrouridine synthase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0050660" class="t">GO:0050660</a> |
| <span class="n">flavin adenine dinucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0055114" class="t">GO:0055114</a> |
| <span class="n">obsolete oxidation-reduction process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:385:j_id58"><div class="term"><span class="t">KOG2335</span><span class="n">tRNA-dihydrouridine synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:1.3.1.88" class="t">EC:1.3.1.88</a><span class="n">tRNA-dihydrouridine16/17 synthase [NAD(P)+]</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01207" class="t">PF01207</a><span class="n">Dihydrouridine synthase (Dus)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001269" class="t">IPR001269</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018517" class="t">IPR018517</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:385:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:386:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15738">15738</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15738&pViewType=protein">15866</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:112861-113422">scaffold_8:112861-113422 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4421_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:386:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:386:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02410" class="t">PF02410</a><span class="n">Ribosomal silencing factor during starvation</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025656" class="t">IPR025656</a><span class="n">missing_ipr025656</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:386:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:387:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15752">15752</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15752&pViewType=protein">15880</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:154132-152913">scaffold_8:152913-154132 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4432_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:387:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0001522" class="t">GO:0001522</a> |
| <span class="n">pseudouridine synthesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:387:j_id58"><div class="term"><span class="t">KOG3262</span><span class="n">H/ACA small nucleolar RNP component GAR1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04410" class="t">PF04410</a><span class="n">Gar1/Naf1 RNA binding region</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007504" class="t">IPR007504</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:387:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:388:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15780">15780</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15780&pViewType=protein">15908</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:221225-217929">scaffold_8:217929-221225 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_335_#_TRINITY_DN1120_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:388:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:388:j_id58"><div class="term"><span class="t">KOG0462</span><span class="n">Elongation factor-type GTP-binding protein</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06421" class="t">PF06421</a><span class="n">GTP-binding protein LepA C-terminus</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00679" class="t">PF00679</a><span class="n">Elongation factor G C-terminus</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000640" class="t">IPR000640</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013842" class="t">IPR013842</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009022" class="t">IPR009022</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006297" class="t">IPR006297</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:388:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:389:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15801">15801</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15801&pViewType=protein">15929</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:264905-270395">scaffold_8:264905-270395 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE725802_46881_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:389:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003774" class="t">GO:0003774</a> |
| <span class="n">cytoskeletal motor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016459" class="t">GO:0016459</a> |
| <span class="n">myosin complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:389:j_id58"><div class="term"><span class="t">KOG0162</span><span class="n">Myosin class I heavy chain</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00063" class="t">PF00063</a><span class="n">Myosin head (motor domain)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00018" class="t">PF00018</a><span class="n">SH3 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06017" class="t">PF06017</a><span class="n">Unconventional myosin tail, actin- and lipid-binding</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001609" class="t">IPR001609</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001452" class="t">IPR001452</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010926" class="t">IPR010926</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:389:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:390:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15809">15809</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15809&pViewType=protein">15937</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:288473-286841">scaffold_8:286841-288473 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">CE725758_6540_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:390:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:390:j_id58"><div class="term"><span class="t">KOG0201</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=1.A.26.1.1&acc=Q45121" class="t">1.A.26.1.1</a><span class="n">Mg2+, Co2+ transporter, MgtE (Smith et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:390:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:391:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15810">15810</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15810&pViewType=protein">15938</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:290511-288638">scaffold_8:288638-290511 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_436_#_TRINITY_DN2074_c1_g1_i5_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:391:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:391:j_id58"><div class="term"><span class="t">KOG0438</span><span class="n">Mitochondrial/chloroplast ribosomal protein L2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03947" class="t">PF03947</a><span class="n">Ribosomal Proteins L2, C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00181" class="t">PF00181</a><span class="n">Ribosomal Proteins L2, RNA binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022666" class="t">IPR022666</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022669" class="t">IPR022669</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008991" class="t">IPR008991</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022671" class="t">IPR022671</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:391:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:392:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15820">15820</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15820&pViewType=protein">15948</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:309370-310696">scaffold_8:309370-310696 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4490_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:392:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005634" class="t">GO:0005634</a> |
| <span class="n">nucleus</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:392:j_id58"><div class="term"><span class="t">KOG1765</span><span class="n">Regulator of ribosome synthesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04939" class="t">PF04939</a><span class="n">Ribosome biogenesis regulatory protein (RRS1)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007023" class="t">IPR007023</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:392:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:393:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15823">15823</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15823&pViewType=protein">15951</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:314829-316082">scaffold_8:314829-316082 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_465_#_TRINITY_DN3048_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:393:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:393:j_id58"><div class="term"><span class="t">KOG1740</span><span class="n">Predicted mitochondrial/chloroplast ribosomal protein S17</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00366" class="t">PF00366</a><span class="n">Ribosomal protein S17</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000266" class="t">IPR000266</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012340" class="t">IPR012340</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:393:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:394:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15840">15840</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15840&pViewType=protein">15968</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:365002-367097">scaffold_8:365002-367097 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_514_#_TRINITY_DN2509_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:394:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0044237" class="t">GO:0044237</a> |
| <span class="n">cellular metabolic process</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:394:j_id58"><div class="term"><span class="t">KOG1467</span><span class="n">Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01008" class="t">PF01008</a><span class="n">Initiation factor 2 subunit family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000649" class="t">IPR000649</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:394:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:395:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15848">15848</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15848&pViewType=protein">15976</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:384553-387613">scaffold_8:384553-387613 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_547_#_TRINITY_DN2024_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:395:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004829" class="t">GO:0004829</a> |
| <span class="n">threonine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006435" class="t">GO:0006435</a> |
| <span class="n">threonyl-tRNA aminoacylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0043039" class="t">GO:0043039</a> |
| <span class="n">tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:395:j_id58"><div class="term"><span class="t">KOG1637</span><span class="n">Threonyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.3" class="t">EC:6.1.1.3</a><span class="n">threonine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03129" class="t">PF03129</a><span class="n">Anticodon binding domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf07973" class="t">PF07973</a><span class="n">Threonyl and Alanyl tRNA synthetase second additional domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02824" class="t">PF02824</a><span class="n">TGS domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00587" class="t">PF00587</a><span class="n">tRNA synthetase class II core domain (G, H, P, S and T)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002320" class="t">IPR002320</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012947" class="t">IPR012947</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002314" class="t">IPR002314</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018163" class="t">IPR018163</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012676" class="t">IPR012676</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004095" class="t">IPR004095</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006195" class="t">IPR006195</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004154" class="t">IPR004154</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:395:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:396:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15870">15870</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15870&pViewType=protein">15998</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:447051-444727">scaffold_8:444727-447051 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_631_#_TRINITY_DN3905_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:396:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:396:j_id58"><div class="term"><span class="t">KOG1491</span><span class="n">Predicted GTP-binding protein (ODN superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06071" class="t">PF06071</a><span class="n">Protein of unknown function (DUF933)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013029" class="t">IPR013029</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012676" class="t">IPR012676</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004396" class="t">IPR004396</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:396:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:397:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15920">15920</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15920&pViewType=protein">16048</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:547573-546732">scaffold_8:546732-547573 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_760_#_TRINITY_DN2105_c0_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:397:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0001522" class="t">GO:0001522</a> |
| <span class="n">pseudouridine synthesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0030515" class="t">GO:0030515</a> |
| <span class="n">snoRNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0072588" class="t">GO:0072588</a> |
| <span class="n">box H/ACA RNP complex</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:397:j_id58"><div class="term"><span class="t">KOG3503</span><span class="n">H/ACA snoRNP complex, subunit NOP10</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04135" class="t">PF04135</a><span class="n">Nucleolar RNA-binding protein, Nop10p family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007264" class="t">IPR007264</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:397:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:398:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15944">15944</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15944&pViewType=protein">16072</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:605906-604811">scaffold_8:604811-605906 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4605_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:398:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:398:j_id58"><div class="term"><span class="t">KOG4759</span><span class="n">Ribosome recycling factor</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01765" class="t">PF01765</a><span class="n">Ribosome recycling factor</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023584" class="t">IPR023584</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:398:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:399:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=15953">15953</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=15953&pViewType=protein">16081</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:618838-621086">scaffold_8:618838-621086 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_855_#_TRINITY_DN1337_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:399:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:399:j_id58"><div class="term"><span class="t">KOG1191</span><span class="n">Mitochondrial GTPase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.-.-" class="t">EC:3.6.-.-</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01926" class="t">PF01926</a><span class="n">50S ribosome-binding GTPase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf10396" class="t">PF10396</a><span class="n">GTP-binding protein TrmE N-terminus</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12631" class="t">PF12631</a><span class="n">MnmE helical domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005225" class="t">IPR005225</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR025867" class="t">IPR025867</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR006073" class="t">IPR006073</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018948" class="t">IPR018948</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:399:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:400:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16003">16003</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16003&pViewType=protein">16131</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:737417-735499">scaffold_8:735499-737417 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1002_#_TRINITY_DN1325_c0_g1_i3_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:400:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015934" class="t">GO:0015934</a> |
| <span class="n">large ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:400:j_id58"><div class="term"><span class="t">KOG1570</span><span class="n">60S ribosomal protein L10A</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00687" class="t">PF00687</a><span class="n">Ribosomal protein L1p/L10e family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002143" class="t">IPR002143</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023674" class="t">IPR023674</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR028364" class="t">IPR028364</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023673" class="t">IPR023673</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:400:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:401:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16072">16072</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16072&pViewType=protein">16200</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:887960-890552">scaffold_8:887960-890552 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1211_#_TRINITY_DN3399_c7_g3_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:401:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:401:j_id58"><div class="term"><span class="t">KOG1167</span><span class="n">Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:401:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:402:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16075">16075</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16075&pViewType=protein">16203</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:895845-899953">scaffold_8:895845-899953 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1228_#_TRINITY_DN3399_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:402:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:402:j_id58"><div class="term"><span class="t">KOG1041</span><span class="n">Translation initiation factor 2C (eIF-2C) and related proteins</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08699" class="t">PF08699</a><span class="n">Argonaute linker 1 domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02170" class="t">PF02170</a><span class="n">PAZ domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02171" class="t">PF02171</a><span class="n">Piwi domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003100" class="t">IPR003100</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014811" class="t">IPR014811</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012337" class="t">IPR012337</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003165" class="t">IPR003165</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:402:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:403:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16080">16080</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16080&pViewType=protein">16208</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:909704-908246">scaffold_8:908246-909704 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1242_#_TRINITY_DN2642_c5_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:403:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:403:j_id58"><div class="term"><span class="t">KOG1613</span><span class="n">Exosomal 3'-5' exoribonuclease complex, subunit Rrp43</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01138" class="t">PF01138</a><span class="n">3' exoribonuclease family, domain 1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001247" class="t">IPR001247</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR015847" class="t">IPR015847</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:403:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:404:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16088">16088</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16088&pViewType=protein">16216</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:925432-923899">scaffold_8:923899-925432 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1262_#_TRINITY_DN548_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:404:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0001522" class="t">GO:0001522</a> |
| <span class="n">pseudouridine synthesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006396" class="t">GO:0006396</a> |
| <span class="n">RNA processing</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009451" class="t">GO:0009451</a> |
| <span class="n">RNA modification</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009982" class="t">GO:0009982</a> |
| <span class="n">pseudouridine synthase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:404:j_id58"><div class="term"><span class="t">KOG2529</span><span class="n">Pseudouridine synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:5.4.99.25" class="t">EC:5.4.99.25</a><span class="n">tRNA pseudouridine55 synthase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01509" class="t">PF01509</a><span class="n">TruB family pseudouridylate synthase (N terminal domain)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020103" class="t">IPR020103</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002501" class="t">IPR002501</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:404:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:405:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16147">16147</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16147&pViewType=protein">16275</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1045490-1043638">scaffold_8:1043638-1045490 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1501_#_TRINITY_DN3437_c5_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:405:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:405:j_id58"><div class="term"><span class="t">KOG0594</span><span class="n">Protein kinase PCTAIRE and related kinases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=1.A.26.1.1&acc=Q45121" class="t">1.A.26.1.1</a><span class="n">Mg2+, Co2+ transporter, MgtE (Smith et al</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:405:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:406:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16178">16178</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16178&pViewType=protein">16306</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1123749-1125478">scaffold_8:1123749-1125478 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.8.703.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:406:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003746" class="t">GO:0003746</a> |
| <span class="n">translation elongation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006414" class="t">GO:0006414</a> |
| <span class="n">translational elongation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:406:j_id58"><div class="term"><span class="t">KOG0460</span><span class="n">Mitochondrial translation elongation factor Tu</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03143" class="t">PF03143</a><span class="n">Elongation factor Tu C-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03144" class="t">PF03144</a><span class="n">Elongation factor Tu domain 2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004541" class="t">IPR004541</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004160" class="t">IPR004160</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004161" class="t">IPR004161</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009000" class="t">IPR009000</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009001" class="t">IPR009001</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:406:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:407:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16200">16200</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16200&pViewType=protein">16328</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1168616-1166233">scaffold_8:1166233-1168616 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1730_#_TRINITY_DN819_c1_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:407:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005730" class="t">GO:0005730</a> |
| <span class="n">nucleolus</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:407:j_id58"><div class="term"><span class="t">KOG2481</span><span class="n">Protein required for normal rRNA processing</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06732" class="t">PF06732</a><span class="n">Pescadillo N-terminus</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00533" class="t">PF00533</a><span class="n">BRCA1 C Terminus (BRCT) domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR010613" class="t">IPR010613</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001357" class="t">IPR001357</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:407:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:408:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16204">16204</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16204&pViewType=protein">16332</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1176848-1177701">scaffold_8:1176848-1177701 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4856_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:408:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:408:j_id58"><div class="term"><span class="t">KOG3291</span><span class="n">Ribosomal protein S7</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00177" class="t">PF00177</a><span class="n">Ribosomal protein S7p/S5e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023798" class="t">IPR023798</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:408:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:409:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16209">16209</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16209&pViewType=protein">16337</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1184970-1194668">scaffold_8:1184970-1194668 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.4861_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:409:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016773" class="t">GO:0016773</a> |
| <span class="n">phosphotransferase activity, alcohol group as acceptor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:409:j_id58"><div class="term"><span class="t">KOG0892</span><span class="n">Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02260" class="t">PF02260</a><span class="n">FATC domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00454" class="t">PF00454</a><span class="n">Phosphatidylinositol 3- and 4-kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf11640" class="t">PF11640</a><span class="n">Telomere-length maintenance and DNA damage repair</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02259" class="t">PF02259</a><span class="n">FAT domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018936" class="t">IPR018936</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR021668" class="t">IPR021668</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014009" class="t">IPR014009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000403" class="t">IPR000403</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003152" class="t">IPR003152</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003151" class="t">IPR003151</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:409:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:410:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16212">16212</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16212&pViewType=protein">16340</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1198460-1196786">scaffold_8:1196786-1198460 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.8_#_1766_#_TRINITY_DN679_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:410:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:410:j_id58"><div class="term"><span class="t">KOG3411</span><span class="n">40S ribosomal protein S19</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01090" class="t">PF01090</a><span class="n">Ribosomal protein S19e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001266" class="t">IPR001266</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018277" class="t">IPR018277</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:410:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:411:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16218">16218</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16218&pViewType=protein">16346</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1218817-1218272">scaffold_8:1218272-1218817 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.8.541.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:411:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:411:j_id58"><div class="term"><span class="t">KOG3291</span><span class="n">Ribosomal protein S7</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00177" class="t">PF00177</a><span class="n">Ribosomal protein S7p/S5e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023798" class="t">IPR023798</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:411:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:412:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16248">16248</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16248&pViewType=protein">16376</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_8:1286203-1287208">scaffold_8:1286203-1287208 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.8.559.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:412:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0019843" class="t">GO:0019843</a> |
| <span class="n">rRNA binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:412:j_id58"><div class="term"><span class="t">KOG3255</span><span class="n">60S ribosomal protein L9</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00347" class="t">PF00347</a><span class="n">Ribosomal protein L6</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000702" class="t">IPR000702</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020040" class="t">IPR020040</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:412:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:413:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16297">16297</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16297&pViewType=protein">16425</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:43204-40683">scaffold_9:40683-43204 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.9.588.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:413:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016887" class="t">GO:0016887</a> |
| <span class="n">ATP hydrolysis activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:413:j_id58"><div class="term"><span class="t">KOG0062</span><span class="n">ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.6.3.44" class="t">EC:3.6.3.44</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00005" class="t">PF00005</a><span class="n">ABC transporter</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12848" class="t">PF12848</a><span class="n">ABC transporter</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003439" class="t">IPR003439</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017871" class="t">IPR017871</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003593" class="t">IPR003593</a><span class="n"></span></div><div class="term"><a href="http://www.tcdb.org/search/result.php?tc=3.A.1.120.6&acc=P43672" class="t">3.A.1.120.6</a><span class="n">The Uup protein (required for bacterial competitiveness (Murat et al., 2008); 39% identical to 3.A.1.120.5).</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:413:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:414:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16380">16380</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16380&pViewType=protein">16508</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:209272-211609">scaffold_9:209272-211609 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">sco_1_gm1.5018_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:414:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:414:j_id58"><div class="term"><span class="t">KOG0123</span><span class="n">Polyadenylate-binding protein (RRM superfamily)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf14259" class="t">PF14259</a><span class="n">obsolete_pf14259</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00076" class="t">PF00076</a><span class="n">RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000504" class="t">IPR000504</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:414:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:415:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16392">16392</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16392&pViewType=protein">16520</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:234544-233351">scaffold_9:233351-234544 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5030_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:415:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:415:j_id58"><div class="term"><span class="t">KOG2646</span><span class="n">Ribosomal protein S5</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00333" class="t">PF00333</a><span class="n">Ribosomal protein S5, N-terminal domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03719" class="t">PF03719</a><span class="n">Ribosomal protein S5, C-terminal domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005324" class="t">IPR005324</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020568" class="t">IPR020568</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013810" class="t">IPR013810</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:415:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:416:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16410">16410</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16410&pViewType=protein">16538</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:288933-290834">scaffold_9:288933-290834 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_501_#_TRINITY_DN1185_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:416:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:416:j_id58"><div class="term"><span class="t">KOG3928</span><span class="n">Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf10236" class="t">PF10236</a><span class="n">Mitochondrial ribosomal death-associated protein 3</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019368" class="t">IPR019368</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:416:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:417:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16418">16418</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16418&pViewType=protein">16546</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:305282-304187">scaffold_9:304187-305282 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_519_#_TRINITY_DN2625_c0_g1_i4_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:417:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:417:j_id58"><div class="term"><span class="t">KOG3449</span><span class="n">60S acidic ribosomal protein P2</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00428" class="t">PF00428</a><span class="n">60s Acidic ribosomal protein</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:417:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:418:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16419">16419</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16419&pViewType=protein">16547</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:305928-306584">scaffold_9:305928-306584 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5058_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:418:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015935" class="t">GO:0015935</a> |
| <span class="n">small ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:418:j_id58"><div class="term"><span class="t">KOG0898</span><span class="n">40S ribosomal protein S15</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00203" class="t">PF00203</a><span class="n">Ribosomal protein S19</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020934" class="t">IPR020934</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002222" class="t">IPR002222</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005713" class="t">IPR005713</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023575" class="t">IPR023575</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:418:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:419:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16423">16423</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16423&pViewType=protein">16551</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:315203-312753">scaffold_9:312753-315203 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_539_#_TRINITY_DN74_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:419:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0001522" class="t">GO:0001522</a> |
| <span class="n">pseudouridine synthesis</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003723" class="t">GO:0003723</a> |
| <span class="n">RNA binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009451" class="t">GO:0009451</a> |
| <span class="n">RNA modification</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0009982" class="t">GO:0009982</a> |
| <span class="n">pseudouridine synthase activity</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:419:j_id58"><div class="term"><span class="t">KOG2553</span><span class="n">Pseudouridylate synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:5.4.99.12" class="t">EC:5.4.99.12</a><span class="n">tRNA pseudouridine38-40 synthase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01416" class="t">PF01416</a><span class="n">tRNA pseudouridine synthase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020103" class="t">IPR020103</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001406" class="t">IPR001406</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020097" class="t">IPR020097</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:419:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:420:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16505">16505</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16505&pViewType=protein">16633</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:504927-506273">scaffold_9:504927-506273 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_811_#_TRINITY_DN2170_c0_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:420:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004164" class="t">GO:0004164</a> |
| <span class="n">diphthine synthase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008152" class="t">GO:0008152</a> |
| <span class="n">metabolic process</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0017183" class="t">GO:0017183</a> |
| <span class="n">peptidyl-diphthamide biosynthetic process from peptidyl-histidine</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:420:j_id58"><div class="term"><span class="t">KOG3123</span><span class="n">Diphthine synthase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.98" class="t">EC:2.1.1.98</a><span class="n">diphthine synthase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00590" class="t">PF00590</a><span class="n">Tetrapyrrole (Corrin/Porphyrin) Methylases</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000878" class="t">IPR000878</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004551" class="t">IPR004551</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:420:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:421:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16528">16528</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16528&pViewType=protein">16656</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:559432-555073">scaffold_9:555073-559432 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_865_#_TRINITY_DN2579_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:421:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0002161" class="t">GO:0002161</a> |
| <span class="n">aminoacyl-tRNA editing activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004832" class="t">GO:0004832</a> |
| <span class="n">valine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006438" class="t">GO:0006438</a> |
| <span class="n">valyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:421:j_id58"><div class="term"><span class="t">KOG0432</span><span class="n">Valyl-tRNA synthetase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.9" class="t">EC:6.1.1.9</a><span class="n">valine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00133" class="t">PF00133</a><span class="n">tRNA synthetases class I (I, L, M and V)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08264" class="t">PF08264</a><span class="n">Anticodon-binding domain of tRNA ligase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002300" class="t">IPR002300</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009008" class="t">IPR009008</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR009080" class="t">IPR009080</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001412" class="t">IPR001412</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002303" class="t">IPR002303</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR013155" class="t">IPR013155</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:421:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:422:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16579">16579</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16579&pViewType=protein">16707</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:679017-680730">scaffold_9:679017-680730 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">estExt_Genewise1.C_9_t10468_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:422:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:422:j_id58"><div class="term"><span class="t">KOG0901</span><span class="n">60S ribosomal protein L14/L17/L23</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00238" class="t">PF00238</a><span class="n">Ribosomal protein L14p/L23e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000218" class="t">IPR000218</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR019972" class="t">IPR019972</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023571" class="t">IPR023571</a><span class="n">missing_ipr023571</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:422:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:423:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16586">16586</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16586&pViewType=protein">16714</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:697506-698356">scaffold_9:697506-698356 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1047_#_TRINITY_DN1582_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:423:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:423:j_id58"><div class="term"><span class="t">KOG3504</span><span class="n">60S ribosomal protein L29</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01779" class="t">PF01779</a><span class="n">Ribosomal L29e protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002673" class="t">IPR002673</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:423:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:424:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16612">16612</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16612&pViewType=protein">16740</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:751805-754209">scaffold_9:751805-754209 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5240_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:424:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:424:j_id58"><div class="term"><span class="t">KOG2409</span><span class="n">KRR1-interacting protein involved in 40S ribosome biogenesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12936" class="t">PF12936</a><span class="n">KRI1-like family C-terminal</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf05178" class="t">PF05178</a><span class="n">KRI1-like family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024626" class="t">IPR024626</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018034" class="t">IPR018034</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:424:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:425:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16615">16615</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16615&pViewType=protein">16743</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:759749-757783">scaffold_9:757783-759749 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.9.528.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:425:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016884" class="t">GO:0016884</a> |
| <span class="n">carbon-nitrogen ligase activity, with glutamine as amido-N-donor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:425:j_id58"><div class="term"><span class="t">KOG1211</span><span class="n">Amidases</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:3.5.1.4" class="t">EC:3.5.1.4</a><span class="n"></span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01425" class="t">PF01425</a><span class="n">Amidase</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000120" class="t">IPR000120</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023631" class="t">IPR023631</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:425:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:426:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16641">16641</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16641&pViewType=protein">16769</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:817376-819252">scaffold_9:817376-819252 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1240_#_TRINITY_DN1577_c0_g2_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:426:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0000166" class="t">GO:0000166</a> |
| <span class="n">nucleotide binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004812" class="t">GO:0004812</a> |
| <span class="n">aminoacyl-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004831" class="t">GO:0004831</a> |
| <span class="n">tyrosine-tRNA ligase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005737" class="t">GO:0005737</a> |
| <span class="n">cytoplasm</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006418" class="t">GO:0006418</a> |
| <span class="n">tRNA aminoacylation for protein translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006437" class="t">GO:0006437</a> |
| <span class="n">tyrosyl-tRNA aminoacylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:426:j_id58"><div class="term"><span class="t">KOG2144</span><span class="n">Tyrosyl-tRNA synthetase, cytoplasmic</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:6.1.1.1" class="t">EC:6.1.1.1</a><span class="n">tyrosine---tRNA ligase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00579" class="t">PF00579</a><span class="n">tRNA synthetases class I (W and Y)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR023617" class="t">IPR023617</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002305" class="t">IPR002305</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002307" class="t">IPR002307</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:426:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:427:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16642">16642</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16642&pViewType=protein">16770</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:819320-820105">scaffold_9:819320-820105 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1242_#_TRINITY_DN382_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:427:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0015934" class="t">GO:0015934</a> |
| <span class="n">large ribosomal subunit</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:427:j_id58"><div class="term"><span class="t">KOG4080</span><span class="n">Mitochondrial ribosomal protein L32</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01783" class="t">PF01783</a><span class="n">Ribosomal L32p protein family</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002677" class="t">IPR002677</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011332" class="t">IPR011332</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:427:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:428:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16677">16677</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16677&pViewType=protein">16805</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:900721-902755">scaffold_9:900721-902755 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.9_#_204_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:428:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0070481" class="t">GO:0070481</a> |
| <span class="n">nuclear-transcribed mRNA catabolic process, non-stop decay</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0070966" class="t">GO:0070966</a> |
| <span class="n">nuclear-transcribed mRNA catabolic process, no-go decay</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0071025" class="t">GO:0071025</a> |
| <span class="n">RNA surveillance</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:428:j_id58"><div class="term"><span class="t">KOG2869</span><span class="n">Meiotic cell division protein Pelota/DOM34</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03465" class="t">PF03465</a><span class="n">eRF1 domain 3</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03463" class="t">PF03463</a><span class="n">eRF1 domain 1</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf03464" class="t">PF03464</a><span class="n">eRF1 domain 2</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR004405" class="t">IPR004405</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005140" class="t">IPR005140</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005141" class="t">IPR005141</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029064" class="t">IPR029064</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005142" class="t">IPR005142</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:428:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:429:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16708">16708</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16708&pViewType=protein">16836</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:973662-977462">scaffold_9:973662-977462 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1432_#_TRINITY_DN2801_c0_g2_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:429:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:429:j_id58"><div class="term"><span class="t">KOG2072</span><span class="n">Translation initiation factor 3, subunit a (eIF-3a)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01399" class="t">PF01399</a><span class="n">PCI domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000717" class="t">IPR000717</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:429:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:430:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16709">16709</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16709&pViewType=protein">16837</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:977494-981631">scaffold_9:977494-981631 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1435_#_TRINITY_DN434_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:430:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003924" class="t">GO:0003924</a> |
| <span class="n">GTPase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005525" class="t">GO:0005525</a> |
| <span class="n">GTP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005634" class="t">GO:0005634</a> |
| <span class="n">nucleus</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0042254" class="t">GO:0042254</a> |
| <span class="n">ribosome biogenesis</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:430:j_id58"><div class="term"><span class="t">KOG1951</span><span class="n">GTP-binding protein AARP2 involved in 40S ribosome biogenesis</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08142" class="t">PF08142</a><span class="n">AARP2CN (NUC121) domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf04950" class="t">PF04950</a><span class="n">40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00009" class="t">PF00009</a><span class="n">Elongation factor Tu GTP binding domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012948" class="t">IPR012948</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000795" class="t">IPR000795</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027417" class="t">IPR027417</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR030387" class="t">IPR030387</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR007034" class="t">IPR007034</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003593" class="t">IPR003593</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:430:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:431:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16729">16729</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16729&pViewType=protein">16857</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1038730-1032908">scaffold_9:1032908-1038730 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">e_gw1.9.647.1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:431:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004674" class="t">GO:0004674</a> |
| <span class="n">protein serine/threonine kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005488" class="t">GO:0005488</a> |
| <span class="n">binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005515" class="t">GO:0005515</a> |
| <span class="n">protein binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016773" class="t">GO:0016773</a> |
| <span class="n">phosphotransferase activity, alcohol group as acceptor</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:431:j_id58"><div class="term"><span class="t">KOG0890</span><span class="n">Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02259" class="t">PF02259</a><span class="n">FAT domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf02260" class="t">PF02260</a><span class="n">FATC domain</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00454" class="t">PF00454</a><span class="n">Phosphatidylinositol 3- and 4-kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf08064" class="t">PF08064</a><span class="n">UME (NUC010) domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR018936" class="t">IPR018936</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR014009" class="t">IPR014009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000403" class="t">IPR000403</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR012993" class="t">IPR012993</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003152" class="t">IPR003152</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR003151" class="t">IPR003151</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR016024" class="t">IPR016024</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:431:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:432:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16754">16754</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16754&pViewType=protein">16882</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1090075-1091801">scaffold_9:1090075-1091801 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1579_#_TRINITY_DN1884_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:432:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005622" class="t">GO:0005622</a> |
| <span class="n">intracellular anatomical structure</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:432:j_id58"><div class="term"><span class="t">KOG0397</span><span class="n">60S ribosomal protein L11</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00281" class="t">PF00281</a><span class="n">Ribosomal protein L5</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00673" class="t">PF00673</a><span class="n">ribosomal L5P family C-terminus</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR022803" class="t">IPR022803</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002132" class="t">IPR002132</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR020929" class="t">IPR020929</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:432:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:433:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16764">16764</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16764&pViewType=protein">16892</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1122087-1121194">scaffold_9:1121194-1122087 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1604_#_TRINITY_DN494_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:433:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003735" class="t">GO:0003735</a> |
| <span class="n">structural constituent of ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005840" class="t">GO:0005840</a> |
| <span class="n">ribosome</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006412" class="t">GO:0006412</a> |
| <span class="n">translation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:433:j_id58"><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00410" class="t">PF00410</a><span class="n">Ribosomal protein S8</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000630" class="t">IPR000630</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:433:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:434:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16765">16765</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16765&pViewType=protein">16893</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1122088-1123180">scaffold_9:1122088-1123180 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1606_#_TRINITY_DN494_c1_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:434:j_id54"></td><td class="rich-table-cell domains" id="search_for_genes:results_table:434:j_id58"><div class="term"><span class="t">KOG3321</span><span class="n">Mitochondrial ribosomal protein S10</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00338" class="t">PF00338</a><span class="n">Ribosomal protein S10p/S20e</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR027486" class="t">IPR027486</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:434:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:435:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16769">16769</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16769&pViewType=protein">16897</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1130370-1132967">scaffold_9:1130370-1132967 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_pm.9_#_248_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:435:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:435:j_id58"><div class="term"><span class="t">KOG2464</span><span class="n">Serine/threonine kinase (haspin family)</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf12330" class="t">PF12330</a><span class="n">Haspin like kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR024604" class="t">IPR024604</a><span class="n">missing_ipr024604</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:435:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:436:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16770">16770</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16770&pViewType=protein">16898</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1134382-1133053">scaffold_9:1133053-1134382 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1621_#_TRINITY_DN2308_c1_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:436:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003676" class="t">GO:0003676</a> |
| <span class="n">nucleic acid binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0008168" class="t">GO:0008168</a> |
| <span class="n">methyltransferase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0032259" class="t">GO:0032259</a> |
| <span class="n">methylation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:436:j_id58"><div class="term"><span class="t">KOG3420</span><span class="n">Predicted RNA methylase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf06325" class="t">PF06325</a><span class="n">Ribosomal protein L11 methyltransferase (PrmA)</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR029063" class="t">IPR029063</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002052" class="t">IPR002052</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:436:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:437:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16771">16771</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16771&pViewType=protein">16899</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1138585-1134667">scaffold_9:1134667-1138585 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">gm1.5383_g_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:437:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:437:j_id58"><div class="term"><span class="t">KOG0661</span><span class="n">MAPK related serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:437:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:438:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16778">16778</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16778&pViewType=protein">16906</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1155434-1159259">scaffold_9:1155434-1159259 (+)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1641_#_TRINITY_DN3326_c7_g1_i2_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:438:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0004672" class="t">GO:0004672</a> |
| <span class="n">protein kinase activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0005524" class="t">GO:0005524</a> |
| <span class="n">ATP binding</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006468" class="t">GO:0006468</a> |
| <span class="n">protein phosphorylation</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0016772" class="t">GO:0016772</a> |
| <span class="n">transferase activity, transferring phosphorus-containing groups</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:438:j_id58"><div class="term"><span class="t">KOG0583</span><span class="n">Serine/threonine protein kinase</span></div><div class="term"><a href="https://www.genome.jp/dbget-bin/www_bget?ec:2.7.11.1" class="t">EC:2.7.11.1</a><span class="n">non-specific serine/threonine protein kinase</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf00069" class="t">PF00069</a><span class="n">Protein kinase domain</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR000719" class="t">IPR000719</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR008271" class="t">IPR008271</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR011009" class="t">IPR011009</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR002290" class="t">IPR002290</a><span class="n">missing_ipr002290</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR017441" class="t">IPR017441</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR028375" class="t">IPR028375</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:438:j_id62"></td></tr><tr class="rich-table-row "><td class="rich-table-cell gene" id="search_for_genes:results_table:439:j_id51"> |
| <div class="term"> |
| <div class="l">Portal:</div> |
| <a class="t" href="/Rhoto_IFO0880_4">Rhoto_IFO0880_4</a> |
| </div> |
| <div class="term"> |
| <div class="l">Portal Name:</div> |
| <div class="v">Rhodosporidium toruloides IFO0880 v4.0</div> |
| </div> |
| <div class="term"> |
| <div class="l">Protein Id:</div> |
| <a class="t" href="/cgi-bin/dispGeneModel?db=Rhoto_IFO0880_4&id=16843">16843</a> |
| </div> |
| <div class="term"> |
| <div class="l">Transcript Id:</div> |
| <a class="t" href="/annotator/servlet/jgi.annotation.Annotation?pDb=Rhoto_IFO0880_4&pStateVar=View&pProteinId=16843&pViewType=protein">16971</a> |
| </div> |
| <div class="term"> |
| <div class="l">Location:</div> |
| <a class="t" href="/cgi-bin/browserLoad/?db=Rhoto_IFO0880_4&position=scaffold_9:1317727-1316187">scaffold_9:1316187-1317727 (-)</a> |
| </div> |
| <div class="term"> |
| <div class="l">Model Name:</div> |
| <div class="v">fgenesh1_kg.9_#_1841_#_TRINITY_DN1787_c0_g1_i1_mRNA</div> |
| </div> |
| <div class="term"> |
| <div class="l">Track:</div> |
| <div class="v">FrozenGeneCatalog</div> |
| </div></td><td class="rich-table-cell ontology" id="search_for_genes:results_table:439:j_id54"> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0003743" class="t">GO:0003743</a> |
| <span class="n">translation initiation factor activity</span> |
| </div> |
| <div class="term"> |
| <a href="http://amigo.geneontology.org/amigo/term/GO:0006413" class="t">GO:0006413</a> |
| <span class="n">translational initiation</span> |
| </div></td><td class="rich-table-cell domains" id="search_for_genes:results_table:439:j_id58"><div class="term"><span class="t">KOG1770</span><span class="n">Translation initiation factor 1 (eIF-1/SUI1)</span></div><div class="term"><a href="https://www.ebi.ac.uk/interpro/entry/pfam/pf01253" class="t">PF01253</a><span class="n">Translation initiation factor SUI1</span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR005874" class="t">IPR005874</a><span class="n"></span></div><div class="term"><a href="http://www.ebi.ac.uk/interpro/entry/IPR001950" class="t">IPR001950</a><span class="n"></span></div></td><td class="rich-table-cell user_annotations" id="search_for_genes:results_table:439:j_id62"></td></tr></tbody></table></div><input id="search_for_genes:organism" type="hidden" name="search_for_genes:organism" value="Rhoto_IFO0880_4" /><input id="search_for_genes:sessionId" type="hidden" name="search_for_genes:sessionId" value="7166024172224214" /><input type="hidden" name="javax.faces.ViewState" id="_viewRoot:javax.faces.ViewState:0" 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| <div class="highlight"><span class="announcement"> |
| We are setup to allow easy downloads of individual projects and don't provide means to download whole collections of data. For your convenience and fast downloads you can use <a href="/help/download.jsf#globus">Globus</a> and <a href="/help/download.jsf#api">API</a>. Our raw reads are also published to SRA at NCBI for bulk download needs. |
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| <h2>Please agree to the Data Usage Policy by clicking "Agree" button below before you can proceed to the downloadable data.</h2> |
| <p>As a public service, the raw sequence data from the genome sequencing projects are being made available to the community by the Department of Energy Joint Genome Institute (JGI) before their publication in the scientific literature. The purpose of this policy is to balance the imperative of DOE and JGI that the data from its sequencing projects be made available to the scientific community as soon as possible with the reasonable expectation that the collaborators and the JGI will publish the primary report without concerns about preemption by other groups that did not participate in the effort.</p> |
| <p>These pre-publication data are preliminary and may contain errors. The goal of our policy is that early release should enable the progress of science. By accessing these data, you agree not to publish any articles containing analyses of genes or genomic data prior to publication by JGI and its collaborators of its comprehensive genome analysis without the consent of project's principal investigator and the JGI. These restrictions will be lifted on the publication of the whole genome description and will be indicated on this page. Scientists must contact the principal collaborator and <a target="_parent" class="feedback" href="#">JGI</a> about their intentions to include any data from this genome in a publication prior to publication of JGI's primary report in order to ensure that their publication that does not compete directly with planned publications (e.g. reserved analyses) of the JGI and collaborators.</p> |
| <p>A principal collaborator listed in the organism's Info page, is the point of contact and arbiter regarding publication plans. Reserved analyses include but are not limited to the identification and analysis of complete (whole genome) sets of genomic features such as genes and gene expression levels, gene families, gene clusters, regulatory elements, repeat structures, GC content, etc., and whole-genome comparisons of regions of evolutionary conservation or change. Manually annotated genes within the Genome Portal are also reserved. Studies of any type on the reserved data sets that are not in direct competition with those planned by the JGI and its collaborators may also be undertaken after an agreement with principal collaborator and JGI. Interested parties must contact the principal collaborator and <a target="_parent" class="feedback" href="#">JGI</a> to discuss such possibilities.</p> |
| <p>If these data are used for publication, the following acknowledgment should be included: "These sequence data were produced by the US Department of Energy Joint Genome Institute http://www.jgi.doe.gov/ in collaboration with the user community." We request that you notify us upon publication so that this information can be included in the <a target="_parent" class="feedback" href="#">final annotation</a>.</p> |
| <p>The data may be freely downloaded and used by all who respect the restrictions in the previous paragraphs. While still in waiting period, the assembly and raw sequence reads should not be redistributed or repackaged without permission from the JGI. When such permission has been obtained, any redistribution of the data during this period should carry this notice: "The Joint Genome Institute provides these data in good faith, but makes no warranty, expressed or implied, nor assumes any legal liability or responsibility for any purpose for which the data are used." and users should be directed to this release policy page. Once moved to unreserved status, the data are freely available for any subsequent use.</p> |
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